miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7260 5' -44.9 NC_001900.1 + 45345 0.66 0.997943
Target:  5'- ------aCACGACGcGCGUgcGUUCUCc -3'
miRNA:   3'- cguuuaaGUGCUGC-CGCAa-UAAGAGc -5'
7260 5' -44.9 NC_001900.1 + 20136 0.66 0.997943
Target:  5'- cGUAGAgcugCGCGACGGCGac-UUC-CGu -3'
miRNA:   3'- -CGUUUaa--GUGCUGCCGCaauAAGaGC- -5'
7260 5' -44.9 NC_001900.1 + 24382 0.66 0.997943
Target:  5'- ----cUUCAgGACGGCGUaAUggcggggaUCUCGu -3'
miRNA:   3'- cguuuAAGUgCUGCCGCAaUA--------AGAGC- -5'
7260 5' -44.9 NC_001900.1 + 3797 0.67 0.997498
Target:  5'- ----cUUCGCGGuCGGCGUgac-CUCGa -3'
miRNA:   3'- cguuuAAGUGCU-GCCGCAauaaGAGC- -5'
7260 5' -44.9 NC_001900.1 + 5002 0.67 0.997498
Target:  5'- gGCuccagCACGGCGGCGggggccgGUaCUCGc -3'
miRNA:   3'- -CGuuuaaGUGCUGCCGCaa-----UAaGAGC- -5'
7260 5' -44.9 NC_001900.1 + 9086 0.68 0.992842
Target:  5'- uGCGAA-UCGCGAUGGCGUcguagGUagUUGg -3'
miRNA:   3'- -CGUUUaAGUGCUGCCGCAa----UAagAGC- -5'
7260 5' -44.9 NC_001900.1 + 5938 0.68 0.99163
Target:  5'- uGCG---UCACGACGGUGUUgaacagcgccccGUggaUCUCGc -3'
miRNA:   3'- -CGUuuaAGUGCUGCCGCAA------------UA---AGAGC- -5'
7260 5' -44.9 NC_001900.1 + 34846 0.68 0.991237
Target:  5'- aCAGGUUCGagGACGGCGgugcgcugaccggUCUCGa -3'
miRNA:   3'- cGUUUAAGUg-CUGCCGCaaua---------AGAGC- -5'
7260 5' -44.9 NC_001900.1 + 40830 0.73 0.919052
Target:  5'- uGguGGUUCACGGCGGCG-----CUCGc -3'
miRNA:   3'- -CguUUAAGUGCUGCCGCaauaaGAGC- -5'
7260 5' -44.9 NC_001900.1 + 6818 0.75 0.818952
Target:  5'- cGCGGAcUUCGCGAUGGCGgguuaCUCGc -3'
miRNA:   3'- -CGUUU-AAGUGCUGCCGCaauaaGAGC- -5'
7260 5' -44.9 NC_001900.1 + 1984 1 0.044117
Target:  5'- cGCAAAUUCACGA-GGCGUUAUUCUCGa -3'
miRNA:   3'- -CGUUUAAGUGCUgCCGCAAUAAGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.