miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7261 3' -53.6 NC_001900.1 + 2161 0.66 0.797244
Target:  5'- cCGAGGGCgUUCgugGCCGa--GAAugGc -3'
miRNA:   3'- aGCUCCCGaAAGa--CGGCcagCUUugC- -5'
7261 3' -53.6 NC_001900.1 + 1605 0.66 0.78734
Target:  5'- uUCGAGgucGGCUUcUCgGCCGGUgGcGACa -3'
miRNA:   3'- -AGCUC---CCGAA-AGaCGGCCAgCuUUGc -5'
7261 3' -53.6 NC_001900.1 + 40263 0.66 0.78734
Target:  5'- -gGGGGGCggcaUGgUGGUCGAAaucGCGg -3'
miRNA:   3'- agCUCCCGaaagACgGCCAGCUU---UGC- -5'
7261 3' -53.6 NC_001900.1 + 35062 0.66 0.78634
Target:  5'- gCGAGGGCUgggCaGCCgccuuGGUCGAccugaucGACa -3'
miRNA:   3'- aGCUCCCGAaa-GaCGG-----CCAGCU-------UUGc -5'
7261 3' -53.6 NC_001900.1 + 8129 0.66 0.777269
Target:  5'- gUCGAGGGCUcUCgcacCCuGUCGAucuGCa -3'
miRNA:   3'- -AGCUCCCGAaAGac--GGcCAGCUu--UGc -5'
7261 3' -53.6 NC_001900.1 + 32647 0.66 0.767044
Target:  5'- --uGGGGU--UCgGUCGGUCGAAGCu -3'
miRNA:   3'- agcUCCCGaaAGaCGGCCAGCUUUGc -5'
7261 3' -53.6 NC_001900.1 + 3396 0.66 0.756676
Target:  5'- -aGGGGGUgggCUGCUuggugaccgGGUCGAggUGg -3'
miRNA:   3'- agCUCCCGaaaGACGG---------CCAGCUuuGC- -5'
7261 3' -53.6 NC_001900.1 + 14653 0.66 0.756676
Target:  5'- gUCGAGGGUcUUCUcGgaGGaUCGGAGCa -3'
miRNA:   3'- -AGCUCCCGaAAGA-CggCC-AGCUUUGc -5'
7261 3' -53.6 NC_001900.1 + 9393 0.67 0.746177
Target:  5'- gUCGAGGGUUUcCgGCuCGGggacgccgaCGAGGCGg -3'
miRNA:   3'- -AGCUCCCGAAaGaCG-GCCa--------GCUUUGC- -5'
7261 3' -53.6 NC_001900.1 + 8649 0.67 0.73556
Target:  5'- cCGAGGGUgaucUUCUGgccCCGGUCc-AGCGg -3'
miRNA:   3'- aGCUCCCGa---AAGAC---GGCCAGcuUUGC- -5'
7261 3' -53.6 NC_001900.1 + 29663 0.67 0.724835
Target:  5'- cCGAuGGGCcggcggCUGCCGGUgGAccgcucucgGACGu -3'
miRNA:   3'- aGCU-CCCGaaa---GACGGCCAgCU---------UUGC- -5'
7261 3' -53.6 NC_001900.1 + 20686 0.67 0.703114
Target:  5'- aCGAuGGUgUUCaGCCGGuUCGGGACGu -3'
miRNA:   3'- aGCUcCCGaAAGaCGGCC-AGCUUUGC- -5'
7261 3' -53.6 NC_001900.1 + 26847 0.68 0.670026
Target:  5'- -gGGGGGCUUucuucgUCUGUCGGaggUCGAAGg- -3'
miRNA:   3'- agCUCCCGAA------AGACGGCC---AGCUUUgc -5'
7261 3' -53.6 NC_001900.1 + 6644 0.69 0.580954
Target:  5'- uUCcAGGGCUgcgUgUGCgGGUCG-AACGg -3'
miRNA:   3'- -AGcUCCCGAa--AgACGgCCAGCuUUGC- -5'
7261 3' -53.6 NC_001900.1 + 2131 0.89 0.035313
Target:  5'- aUCGAGGGCUUUCU-CgCGGUCGAAACGc -3'
miRNA:   3'- -AGCUCCCGAAAGAcG-GCCAGCUUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.