miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7261 5' -56 NC_001900.1 + 33777 0.66 0.687723
Target:  5'- cGGCGUcuc-GGCCGAaccgugcGGCCACGg -3'
miRNA:   3'- -CCGCAagcaCCGGCUcuua---CCGGUGC- -5'
7261 5' -56 NC_001900.1 + 40308 0.66 0.676879
Target:  5'- cGGCaGUgagcCGcugcGGCCGuGGuUGGCCGCGu -3'
miRNA:   3'- -CCG-CAa---GCa---CCGGCuCUuACCGGUGC- -5'
7261 5' -56 NC_001900.1 + 23314 0.66 0.669263
Target:  5'- cGGCGgUCGgccccggcugGGCCGAGuucuauaccggcggcGGCUACGg -3'
miRNA:   3'- -CCGCaAGCa---------CCGGCUCuua------------CCGGUGC- -5'
7261 5' -56 NC_001900.1 + 16967 0.66 0.665993
Target:  5'- aGCGUUCGgcgcugGaGCCGGu-GUGGUCGCa -3'
miRNA:   3'- cCGCAAGCa-----C-CGGCUcuUACCGGUGc -5'
7261 5' -56 NC_001900.1 + 23844 0.67 0.611298
Target:  5'- cGGCGcUgG-GGCUGGGAA-GGCCAgGc -3'
miRNA:   3'- -CCGCaAgCaCCGGCUCUUaCCGGUgC- -5'
7261 5' -56 NC_001900.1 + 6396 0.67 0.589478
Target:  5'- aGCGgcCGUGGCCGGugc-GGCUGCGc -3'
miRNA:   3'- cCGCaaGCACCGGCUcuuaCCGGUGC- -5'
7261 5' -56 NC_001900.1 + 30784 0.68 0.546329
Target:  5'- cGGCcuUUCGgGGCCGGuGggUucGGCCACu -3'
miRNA:   3'- -CCGc-AAGCaCCGGCU-CuuA--CCGGUGc -5'
7261 5' -56 NC_001900.1 + 2265 0.68 0.545261
Target:  5'- ---cUUgGUGGCCGAGAggcgggugaucacGUGGCCAUc -3'
miRNA:   3'- ccgcAAgCACCGGCUCU-------------UACCGGUGc -5'
7261 5' -56 NC_001900.1 + 2216 0.69 0.493928
Target:  5'- aGUGgg-GUGGCUGGGAG-GGCCugGa -3'
miRNA:   3'- cCGCaagCACCGGCUCUUaCCGGugC- -5'
7261 5' -56 NC_001900.1 + 3544 0.7 0.406078
Target:  5'- cGGCGcUCGgGGCCGGuAAcGGCCugGu -3'
miRNA:   3'- -CCGCaAGCaCCGGCUcUUaCCGGugC- -5'
7261 5' -56 NC_001900.1 + 47589 0.7 0.406078
Target:  5'- aGCGacguUUCGUcGGCCGGGggUGGCgAa- -3'
miRNA:   3'- cCGC----AAGCA-CCGGCUCuuACCGgUgc -5'
7261 5' -56 NC_001900.1 + 10661 0.72 0.336748
Target:  5'- aGGCGgaaucacccccUUCGaUGGCCGGuuGUGGCUugGg -3'
miRNA:   3'- -CCGC-----------AAGC-ACCGGCUcuUACCGGugC- -5'
7261 5' -56 NC_001900.1 + 15363 0.73 0.283493
Target:  5'- aGGCGUUCG-GGCCGuAGuacaGGCCgaGCGa -3'
miRNA:   3'- -CCGCAAGCaCCGGC-UCuua-CCGG--UGC- -5'
7261 5' -56 NC_001900.1 + 2165 1.1 0.000682
Target:  5'- gGGCGUUCGUGGCCGAGAAUGGCCACGu -3'
miRNA:   3'- -CCGCAAGCACCGGCUCUUACCGGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.