Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7262 | 3' | -52.2 | NC_001900.1 | + | 13892 | 0.71 | 0.572866 |
Target: 5'- -gGUCAUCGACGcGGACgggaACAAGAAGa -3' miRNA: 3'- gaCGGUGGCUGCaUCUGg---UGUUCUUC- -5' |
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7262 | 3' | -52.2 | NC_001900.1 | + | 40320 | 0.71 | 0.550594 |
Target: 5'- gCUGCgGCCGugGUuGGCCGCGucGAGu -3' miRNA: 3'- -GACGgUGGCugCAuCUGGUGUucUUC- -5' |
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7262 | 3' | -52.2 | NC_001900.1 | + | 2475 | 1.08 | 0.002028 |
Target: 5'- gCUGCCACCGACGUAGACCACAAGAAGc -3' miRNA: 3'- -GACGGUGGCUGCAUCUGGUGUUCUUC- -5' |
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7262 | 3' | -52.2 | NC_001900.1 | + | 23394 | 0.67 | 0.793035 |
Target: 5'- -gGCCaucagGCCGA-GUGGACCGacCAGGGAGc -3' miRNA: 3'- gaCGG-----UGGCUgCAUCUGGU--GUUCUUC- -5' |
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7262 | 3' | -52.2 | NC_001900.1 | + | 25478 | 0.68 | 0.73001 |
Target: 5'- -aGCCGCCaGCGUGGcucCCACGgcccGGAGGu -3' miRNA: 3'- gaCGGUGGcUGCAUCu--GGUGU----UCUUC- -5' |
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7262 | 3' | -52.2 | NC_001900.1 | + | 20126 | 0.68 | 0.719069 |
Target: 5'- -aGCCACCgGACGUAGAgCUGCGcGAc- -3' miRNA: 3'- gaCGGUGG-CUGCAUCU-GGUGUuCUuc -5' |
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7262 | 3' | -52.2 | NC_001900.1 | + | 25588 | 0.66 | 0.840788 |
Target: 5'- gCUGCCcCCG-CGUGGuggucACCAgGAGAGc -3' miRNA: 3'- -GACGGuGGCuGCAUC-----UGGUgUUCUUc -5' |
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7262 | 3' | -52.2 | NC_001900.1 | + | 23655 | 0.66 | 0.840788 |
Target: 5'- -gGCUACCGGCGUAgaggcucuGACCACu----- -3' miRNA: 3'- gaCGGUGGCUGCAU--------CUGGUGuucuuc -5' |
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7262 | 3' | -52.2 | NC_001900.1 | + | 6734 | 0.66 | 0.831661 |
Target: 5'- -gGCCuucCCGAUGUGG-CCGucgguCGAGAAGg -3' miRNA: 3'- gaCGGu--GGCUGCAUCuGGU-----GUUCUUC- -5' |
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7262 | 3' | -52.2 | NC_001900.1 | + | 23226 | 0.66 | 0.826078 |
Target: 5'- uCUGCCAUCGcCGagcugcaggcucgccUGGACgCACAGGAc- -3' miRNA: 3'- -GACGGUGGCuGC---------------AUCUG-GUGUUCUuc -5' |
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7262 | 3' | -52.2 | NC_001900.1 | + | 6887 | 0.68 | 0.762158 |
Target: 5'- cCUGCCuCCGACGggcAGGcuCCACAGGu-- -3' miRNA: 3'- -GACGGuGGCUGCa--UCU--GGUGUUCuuc -5' |
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7262 | 3' | -52.2 | NC_001900.1 | + | 31735 | 0.7 | 0.617953 |
Target: 5'- -aGCCACCuGGCGguuGACCGCAGuGAc- -3' miRNA: 3'- gaCGGUGG-CUGCau-CUGGUGUU-CUuc -5' |
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7262 | 3' | -52.2 | NC_001900.1 | + | 3067 | 0.66 | 0.831661 |
Target: 5'- --cCCGCCGACcc-GACCGgCGGGAAGg -3' miRNA: 3'- gacGGUGGCUGcauCUGGU-GUUCUUC- -5' |
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7262 | 3' | -52.2 | NC_001900.1 | + | 36419 | 0.7 | 0.617953 |
Target: 5'- cCUGCUugCgGACGUAGAUCACGGc--- -3' miRNA: 3'- -GACGGugG-CUGCAUCUGGUGUUcuuc -5' |
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7262 | 3' | -52.2 | NC_001900.1 | + | 35768 | 0.67 | 0.81275 |
Target: 5'- -cGCCGCCGACGUAcuGCUcCAGGucGu -3' miRNA: 3'- gaCGGUGGCUGCAUc-UGGuGUUCuuC- -5' |
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7262 | 3' | -52.2 | NC_001900.1 | + | 15110 | 0.66 | 0.840788 |
Target: 5'- -aGCCACCGgcuggucgaGCGUcGGCCACAccAGccGAGg -3' miRNA: 3'- gaCGGUGGC---------UGCAuCUGGUGU--UC--UUC- -5' |
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7262 | 3' | -52.2 | NC_001900.1 | + | 29760 | 0.66 | 0.858336 |
Target: 5'- --cCCACCGcCGUAGACC-CGGccGAAGu -3' miRNA: 3'- gacGGUGGCuGCAUCUGGuGUU--CUUC- -5' |
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7262 | 3' | -52.2 | NC_001900.1 | + | 49019 | 0.69 | 0.696927 |
Target: 5'- aUGCCAUCGuCGcAGGUCACGGGggGu -3' miRNA: 3'- gACGGUGGCuGCaUCUGGUGUUCuuC- -5' |
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7262 | 3' | -52.2 | NC_001900.1 | + | 15814 | 0.71 | 0.5617 |
Target: 5'- -gGCCcgcgaaGCCGugGUcgAGGCCGuCAAGGAGg -3' miRNA: 3'- gaCGG------UGGCugCA--UCUGGU-GUUCUUC- -5' |
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7262 | 3' | -52.2 | NC_001900.1 | + | 48302 | 0.68 | 0.73001 |
Target: 5'- -aGCCACCGAC-UAGuCCGguAGAGu -3' miRNA: 3'- gaCGGUGGCUGcAUCuGGUguUCUUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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