miRNA display CGI


Results 21 - 37 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7262 3' -52.2 NC_001900.1 + 31979 0.67 0.782904
Target:  5'- aUGaCCGCCGAgG-AGACCGagcgguuccguCGAGAGGg -3'
miRNA:   3'- gAC-GGUGGCUgCaUCUGGU-----------GUUCUUC- -5'
7262 3' -52.2 NC_001900.1 + 6887 0.68 0.762158
Target:  5'- cCUGCCuCCGACGggcAGGcuCCACAGGu-- -3'
miRNA:   3'- -GACGGuGGCUGCa--UCU--GGUGUUCuuc -5'
7262 3' -52.2 NC_001900.1 + 21273 0.68 0.751567
Target:  5'- -cGCCACCGAUGUucACCAgggcCGAGAu- -3'
miRNA:   3'- gaCGGUGGCUGCAucUGGU----GUUCUuc -5'
7262 3' -52.2 NC_001900.1 + 46304 0.68 0.751567
Target:  5'- aCUGCCACCcguGACcgcGACgGCAAGAAu -3'
miRNA:   3'- -GACGGUGG---CUGcauCUGgUGUUCUUc -5'
7262 3' -52.2 NC_001900.1 + 48302 0.68 0.73001
Target:  5'- -aGCCACCGAC-UAGuCCGguAGAGu -3'
miRNA:   3'- gaCGGUGGCUGcAUCuGGUguUCUUc -5'
7262 3' -52.2 NC_001900.1 + 25478 0.68 0.73001
Target:  5'- -aGCCGCCaGCGUGGcucCCACGgcccGGAGGu -3'
miRNA:   3'- gaCGGUGGcUGCAUCu--GGUGU----UCUUC- -5'
7262 3' -52.2 NC_001900.1 + 20126 0.68 0.719069
Target:  5'- -aGCCACCgGACGUAGAgCUGCGcGAc- -3'
miRNA:   3'- gaCGGUGG-CUGCAUCU-GGUGUuCUuc -5'
7262 3' -52.2 NC_001900.1 + 49019 0.69 0.696927
Target:  5'- aUGCCAUCGuCGcAGGUCACGGGggGu -3'
miRNA:   3'- gACGGUGGCuGCaUCUGGUGUUCuuC- -5'
7262 3' -52.2 NC_001900.1 + 36419 0.7 0.617953
Target:  5'- cCUGCUugCgGACGUAGAUCACGGc--- -3'
miRNA:   3'- -GACGGugG-CUGCAUCUGGUGUUcuuc -5'
7262 3' -52.2 NC_001900.1 + 31735 0.7 0.617953
Target:  5'- -aGCCACCuGGCGguuGACCGCAGuGAc- -3'
miRNA:   3'- gaCGGUGG-CUGCau-CUGGUGUU-CUuc -5'
7262 3' -52.2 NC_001900.1 + 14573 0.71 0.584084
Target:  5'- gUGCCGCCGAUGgcGGCUcggguCAGGAu- -3'
miRNA:   3'- gACGGUGGCUGCauCUGGu----GUUCUuc -5'
7262 3' -52.2 NC_001900.1 + 36342 0.71 0.572866
Target:  5'- cCUGCCGCUGGCGaugaaggaacUGGGCUcCAAGAAc -3'
miRNA:   3'- -GACGGUGGCUGC----------AUCUGGuGUUCUUc -5'
7262 3' -52.2 NC_001900.1 + 13892 0.71 0.572866
Target:  5'- -gGUCAUCGACGcGGACgggaACAAGAAGa -3'
miRNA:   3'- gaCGGUGGCUGCaUCUGg---UGUUCUUC- -5'
7262 3' -52.2 NC_001900.1 + 15814 0.71 0.5617
Target:  5'- -gGCCcgcgaaGCCGugGUcgAGGCCGuCAAGGAGg -3'
miRNA:   3'- gaCGG------UGGCugCA--UCUGGU-GUUCUUC- -5'
7262 3' -52.2 NC_001900.1 + 40320 0.71 0.550594
Target:  5'- gCUGCgGCCGugGUuGGCCGCGucGAGu -3'
miRNA:   3'- -GACGgUGGCugCAuCUGGUGUucUUC- -5'
7262 3' -52.2 NC_001900.1 + 28299 0.74 0.405256
Target:  5'- -cGCUACCGACG-AGGCCguccGCAAGGAc -3'
miRNA:   3'- gaCGGUGGCUGCaUCUGG----UGUUCUUc -5'
7262 3' -52.2 NC_001900.1 + 2475 1.08 0.002028
Target:  5'- gCUGCCACCGACGUAGACCACAAGAAGc -3'
miRNA:   3'- -GACGGUGGCUGCAUCUGGUGUUCUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.