miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7263 3' -57.6 NC_001900.1 + 13052 0.67 0.537394
Target:  5'- aGCGacgaaCGCCUc-GGCGUCGUUGcAGUGGa -3'
miRNA:   3'- -UGCg----GUGGGacCCGCAGCAAU-UCGCC- -5'
7263 3' -57.6 NC_001900.1 + 2567 0.67 0.535289
Target:  5'- -aGCCGCUgaGGGCGUagcccgacGGCGGg -3'
miRNA:   3'- ugCGGUGGgaCCCGCAgcaau---UCGCC- -5'
7263 3' -57.6 NC_001900.1 + 12086 0.67 0.53109
Target:  5'- gAUGCCgagaacGCCCUucauGGCGUugaggaucgggucacCGUUGAGCGGc -3'
miRNA:   3'- -UGCGG------UGGGAc---CCGCA---------------GCAAUUCGCC- -5'
7263 3' -57.6 NC_001900.1 + 43828 0.67 0.526903
Target:  5'- aACGCCGCUUcuGGCGUCGggAA-CGGc -3'
miRNA:   3'- -UGCGGUGGGacCCGCAGCaaUUcGCC- -5'
7263 3' -57.6 NC_001900.1 + 12188 0.67 0.51649
Target:  5'- uCGCCGgUCUGGGCGaUC--UGAGCGu -3'
miRNA:   3'- uGCGGUgGGACCCGC-AGcaAUUCGCc -5'
7263 3' -57.6 NC_001900.1 + 17756 0.67 0.495922
Target:  5'- aGCGCCcgucagcaucguGCCgaGGGUGUCGgccAGCGu -3'
miRNA:   3'- -UGCGG------------UGGgaCCCGCAGCaauUCGCc -5'
7263 3' -57.6 NC_001900.1 + 34910 0.67 0.482753
Target:  5'- cCGCCGCCCggacgcGGGacaGUCGUagacgcgcuccuugUGGGCGa -3'
miRNA:   3'- uGCGGUGGGa-----CCCg--CAGCA--------------AUUCGCc -5'
7263 3' -57.6 NC_001900.1 + 24004 0.68 0.454006
Target:  5'- cCGCCACCgagaccgCUGGGgucguUGUCGUUGAucgugacGCGGg -3'
miRNA:   3'- uGCGGUGG-------GACCC-----GCAGCAAUU-------CGCC- -5'
7263 3' -57.6 NC_001900.1 + 6227 0.68 0.44624
Target:  5'- cCGgCAUCCUGGGCaUCGcccugaucugGGGCGGg -3'
miRNA:   3'- uGCgGUGGGACCCGcAGCaa--------UUCGCC- -5'
7263 3' -57.6 NC_001900.1 + 24302 0.7 0.347637
Target:  5'- gUGCUGCCaCUGGGaUGUCGgUGAGCGu -3'
miRNA:   3'- uGCGGUGG-GACCC-GCAGCaAUUCGCc -5'
7263 3' -57.6 NC_001900.1 + 23143 0.7 0.347637
Target:  5'- gGCGCaGCCC-GGGCGaggaccagaccgUCGUUGAGcCGGc -3'
miRNA:   3'- -UGCGgUGGGaCCCGC------------AGCAAUUC-GCC- -5'
7263 3' -57.6 NC_001900.1 + 1554 0.75 0.17511
Target:  5'- uCGCCugCUUcaGGGUGUCGU--AGCGGg -3'
miRNA:   3'- uGCGGugGGA--CCCGCAGCAauUCGCC- -5'
7263 3' -57.6 NC_001900.1 + 2626 1.1 0.00044
Target:  5'- aACGCCACCCUGGGCGUCGUUAAGCGGg -3'
miRNA:   3'- -UGCGGUGGGACCCGCAGCAAUUCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.