miRNA display CGI


Results 1 - 4 of 4 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7263 5' -59.4 NC_001900.1 + 42400 0.68 0.320533
Target:  5'- aUCCGCUCAGGAuGGaGACUGaccgcgagaucUGGGUg -3'
miRNA:   3'- gAGGUGGGUCCU-CCaCUGAC-----------ACCCGu -5'
7263 5' -59.4 NC_001900.1 + 2209 0.7 0.262922
Target:  5'- -gCCACCaAGuGGGGUGGCUGggaGGGCc -3'
miRNA:   3'- gaGGUGGgUC-CUCCACUGACa--CCCGu -5'
7263 5' -59.4 NC_001900.1 + 24867 0.71 0.214013
Target:  5'- -aCCGCCCgAGaAGGUGGCUGUGGuGUc -3'
miRNA:   3'- gaGGUGGG-UCcUCCACUGACACC-CGu -5'
7263 5' -59.4 NC_001900.1 + 2664 1.08 0.000394
Target:  5'- gCUCCACCCAGGAGGUGACUGUGGGCAc -3'
miRNA:   3'- -GAGGUGGGUCCUCCACUGACACCCGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.