miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7264 3' -56.4 NC_001900.1 + 47679 0.66 0.6719
Target:  5'- aACGCUCCGaAGGuucgccaccCCCGGCCGAcgaAACGu -3'
miRNA:   3'- -UGUGGGGCcUCUu--------GGGCUGGCU---UUGC- -5'
7264 3' -56.4 NC_001900.1 + 5412 0.66 0.6719
Target:  5'- uACGCCagCGGGGAcgccuacgacACCCGaACCGAccuCGg -3'
miRNA:   3'- -UGUGGg-GCCUCU----------UGGGC-UGGCUuu-GC- -5'
7264 3' -56.4 NC_001900.1 + 13470 0.66 0.6719
Target:  5'- uGCGuaaCCCGGAGGGCUaccucucggaGACCGAcggGGCGu -3'
miRNA:   3'- -UGUg--GGGCCUCUUGGg---------CUGGCU---UUGC- -5'
7264 3' -56.4 NC_001900.1 + 23145 0.66 0.661067
Target:  5'- cGCAgCCCGGgcgAGGACCaGACCGu--CGu -3'
miRNA:   3'- -UGUgGGGCC---UCUUGGgCUGGCuuuGC- -5'
7264 3' -56.4 NC_001900.1 + 44627 0.66 0.650208
Target:  5'- uCACCgaGGAGAcCCCGAacuUCGAGugGu -3'
miRNA:   3'- uGUGGggCCUCUuGGGCU---GGCUUugC- -5'
7264 3' -56.4 NC_001900.1 + 1698 0.66 0.639333
Target:  5'- cGCGCUgaCCGGGGGugucgccaCCGGCCGAGAa- -3'
miRNA:   3'- -UGUGG--GGCCUCUug------GGCUGGCUUUgc -5'
7264 3' -56.4 NC_001900.1 + 4359 0.66 0.639333
Target:  5'- cACGCUCUGGGGAaccGCCCGcUUGGcuGACGa -3'
miRNA:   3'- -UGUGGGGCCUCU---UGGGCuGGCU--UUGC- -5'
7264 3' -56.4 NC_001900.1 + 35868 0.66 0.639333
Target:  5'- gAUGCuCCUGGAGAACUggucgcaggaCGACCuGGAGCa -3'
miRNA:   3'- -UGUG-GGGCCUCUUGG----------GCUGG-CUUUGc -5'
7264 3' -56.4 NC_001900.1 + 32950 0.66 0.639333
Target:  5'- cCGCCuuGGAGAcACCgGACUuGAACu -3'
miRNA:   3'- uGUGGggCCUCU-UGGgCUGGcUUUGc -5'
7264 3' -56.4 NC_001900.1 + 5901 0.66 0.638245
Target:  5'- gGCGaCCCGcAGAACCCGGacggcucggagccCCGGAGCa -3'
miRNA:   3'- -UGUgGGGCcUCUUGGGCU-------------GGCUUUGc -5'
7264 3' -56.4 NC_001900.1 + 15226 0.66 0.628451
Target:  5'- uCACCaCC-GAGGAUCCGAUCGAcuACGu -3'
miRNA:   3'- uGUGG-GGcCUCUUGGGCUGGCUu-UGC- -5'
7264 3' -56.4 NC_001900.1 + 30258 0.66 0.628451
Target:  5'- uCGCUgCgGGAGGcgagaaagcucACCUGGCCGAGAUGg -3'
miRNA:   3'- uGUGGgG-CCUCU-----------UGGGCUGGCUUUGC- -5'
7264 3' -56.4 NC_001900.1 + 5016 0.67 0.617573
Target:  5'- aACGCCucCCGGAGGgagucgccugaACCCGAggUCGuAGACGa -3'
miRNA:   3'- -UGUGG--GGCCUCU-----------UGGGCU--GGC-UUUGC- -5'
7264 3' -56.4 NC_001900.1 + 24268 0.67 0.611051
Target:  5'- -aGCCCCGGAGAucgucuuguucgucaGCaCGGCgGGAGCc -3'
miRNA:   3'- ugUGGGGCCUCU---------------UGgGCUGgCUUUGc -5'
7264 3' -56.4 NC_001900.1 + 22147 0.67 0.606706
Target:  5'- -gGCCUCGGA-AGgCCGGCUGGAACu -3'
miRNA:   3'- ugUGGGGCCUcUUgGGCUGGCUUUGc -5'
7264 3' -56.4 NC_001900.1 + 23404 0.67 0.606706
Target:  5'- cCGCCgCCGGuauAGAACUCGgcccaGCCGggGCc -3'
miRNA:   3'- uGUGG-GGCC---UCUUGGGC-----UGGCuuUGc -5'
7264 3' -56.4 NC_001900.1 + 41931 0.67 0.605621
Target:  5'- cCACCCCGGuucuugaccguGGAGacguugagcgaguCCgGGCCGAAGCc -3'
miRNA:   3'- uGUGGGGCC-----------UCUU-------------GGgCUGGCUUUGc -5'
7264 3' -56.4 NC_001900.1 + 46894 0.67 0.595862
Target:  5'- cGCugCCCGGAgcuGAACa--ACCGAGACu -3'
miRNA:   3'- -UGugGGGCCU---CUUGggcUGGCUUUGc -5'
7264 3' -56.4 NC_001900.1 + 22693 0.67 0.585047
Target:  5'- uCugCUCGGuGuaguCCUGGCCGAAGCu -3'
miRNA:   3'- uGugGGGCCuCuu--GGGCUGGCUUUGc -5'
7264 3' -56.4 NC_001900.1 + 36266 0.67 0.585047
Target:  5'- gGCGucgUCCCGGAGAGgggUUCGgcuGCCGAGGCGa -3'
miRNA:   3'- -UGU---GGGGCCUCUU---GGGC---UGGCUUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.