miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7265 3' -59.1 NC_001900.1 + 3351 0.66 0.458092
Target:  5'- aGCggaaGUCGCGGCCGGugACCAG-GCAg -3'
miRNA:   3'- -UGag--UAGCGCCGGUUcgUGGUCcCGU- -5'
7265 3' -59.1 NC_001900.1 + 42013 0.66 0.458092
Target:  5'- cGCUCAaCGUcuccacGGUCAAGaACCGGGGUg -3'
miRNA:   3'- -UGAGUaGCG------CCGGUUCgUGGUCCCGu -5'
7265 3' -59.1 NC_001900.1 + 28050 0.66 0.458092
Target:  5'- cAC-CGUCacaGGCCGugaGGC-CCAGGGCGa -3'
miRNA:   3'- -UGaGUAGcg-CCGGU---UCGuGGUCCCGU- -5'
7265 3' -59.1 NC_001900.1 + 23220 0.66 0.458092
Target:  5'- aACUCGUCuGCcaucGCCGAGCugCAGGcucGCc -3'
miRNA:   3'- -UGAGUAG-CGc---CGGUUCGugGUCC---CGu -5'
7265 3' -59.1 NC_001900.1 + 23500 0.66 0.455126
Target:  5'- cGCUCGUCGUcggcaccauccccGGUgAGGCugcaggccucuuCCGGGGCGg -3'
miRNA:   3'- -UGAGUAGCG-------------CCGgUUCGu-----------GGUCCCGU- -5'
7265 3' -59.1 NC_001900.1 + 16818 0.66 0.448246
Target:  5'- cGCgaaggCGUCGUcucaGGUUcAGCACCuGGGCAa -3'
miRNA:   3'- -UGa----GUAGCG----CCGGuUCGUGGuCCCGU- -5'
7265 3' -59.1 NC_001900.1 + 32076 0.66 0.428912
Target:  5'- uGCUCGUUGCGacaugcucaGCCuccguAGCugUAGGGUu -3'
miRNA:   3'- -UGAGUAGCGC---------CGGu----UCGugGUCCCGu -5'
7265 3' -59.1 NC_001900.1 + 14229 0.66 0.423208
Target:  5'- ---gGUCGCGGCCAGGCACgucgauguccgcaagCGGGuCAa -3'
miRNA:   3'- ugagUAGCGCCGGUUCGUG---------------GUCCcGU- -5'
7265 3' -59.1 NC_001900.1 + 13939 0.66 0.419431
Target:  5'- aGCUCuUCGgGGUagaCGAGCACCGGcuGGUAc -3'
miRNA:   3'- -UGAGuAGCgCCG---GUUCGUGGUC--CCGU- -5'
7265 3' -59.1 NC_001900.1 + 20240 0.66 0.41849
Target:  5'- aGCUC-UCGCugagccacuaccuGGCCAAGUgggugaugaaccACCGGGGUc -3'
miRNA:   3'- -UGAGuAGCG-------------CCGGUUCG------------UGGUCCCGu -5'
7265 3' -59.1 NC_001900.1 + 10553 0.67 0.400857
Target:  5'- gGCcCAUCGCGGCCucuuccucGUcCCAGcGGCGc -3'
miRNA:   3'- -UGaGUAGCGCCGGuu------CGuGGUC-CCGU- -5'
7265 3' -59.1 NC_001900.1 + 40396 0.67 0.400857
Target:  5'- cACUCGaCGCGGCCAaccacGGC-CgCAGcGGCu -3'
miRNA:   3'- -UGAGUaGCGCCGGU-----UCGuG-GUC-CCGu -5'
7265 3' -59.1 NC_001900.1 + 43841 0.67 0.400857
Target:  5'- --gCGUCGggaaCGGCC-AGCGCgAGGGCu -3'
miRNA:   3'- ugaGUAGC----GCCGGuUCGUGgUCCCGu -5'
7265 3' -59.1 NC_001900.1 + 3046 0.67 0.399942
Target:  5'- gUUgAUCGCGGUCAGcuucaucGCACCGauGGGCu -3'
miRNA:   3'- uGAgUAGCGCCGGUU-------CGUGGU--CCCGu -5'
7265 3' -59.1 NC_001900.1 + 7841 0.67 0.382815
Target:  5'- cAC-CGUCGCGGCCGucaGCCAGGa-- -3'
miRNA:   3'- -UGaGUAGCGCCGGUucgUGGUCCcgu -5'
7265 3' -59.1 NC_001900.1 + 46516 0.67 0.382815
Target:  5'- uGCUCAcggUGCGGCCAugaggcgcagaGGUACCGaGGCc -3'
miRNA:   3'- -UGAGUa--GCGCCGGU-----------UCGUGGUcCCGu -5'
7265 3' -59.1 NC_001900.1 + 36058 0.68 0.340133
Target:  5'- gGCgaaCAUCGCgaucaugcuGGUCGAGCACCccGGGCu -3'
miRNA:   3'- -UGa--GUAGCG---------CCGGUUCGUGGu-CCCGu -5'
7265 3' -59.1 NC_001900.1 + 19262 0.68 0.332022
Target:  5'- aACUCggUGUcccaGGUagCGAGCACCGGGGUAg -3'
miRNA:   3'- -UGAGuaGCG----CCG--GUUCGUGGUCCCGU- -5'
7265 3' -59.1 NC_001900.1 + 6851 0.68 0.31934
Target:  5'- aGC-CAUCGUGGUuggccaggugcuCAAGCACCAcauccugccuccgacGGGCAg -3'
miRNA:   3'- -UGaGUAGCGCCG------------GUUCGUGGU---------------CCCGU- -5'
7265 3' -59.1 NC_001900.1 + 153 0.7 0.239511
Target:  5'- gGCUCcUgGUGGCuCAcAGCGCCuGGGCGa -3'
miRNA:   3'- -UGAGuAgCGCCG-GU-UCGUGGuCCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.