miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7265 5' -53 NC_001900.1 + 13265 0.66 0.794887
Target:  5'- uGGUGCGAggcuuccgagGAcGCUuccaaccgccaGCCGCGAUCAGg -3'
miRNA:   3'- -CCACGCUa---------CUuCGAc----------UGGCGCUAGUU- -5'
7265 5' -53 NC_001900.1 + 17897 0.66 0.794887
Target:  5'- aGGUGCGGUcauucAGUUGGCCccgaCGAUCAu -3'
miRNA:   3'- -CCACGCUAcu---UCGACUGGc---GCUAGUu -5'
7265 5' -53 NC_001900.1 + 30049 0.67 0.731782
Target:  5'- cGGUGCGucgGUGcuuccucGCUGACCcCGGUCAc -3'
miRNA:   3'- -CCACGC---UACuu-----CGACUGGcGCUAGUu -5'
7265 5' -53 NC_001900.1 + 42403 0.67 0.731782
Target:  5'- --cGCucagGAUGGAGaCUGACCGCGAg--- -3'
miRNA:   3'- ccaCG----CUACUUC-GACUGGCGCUaguu -5'
7265 5' -53 NC_001900.1 + 31678 0.69 0.630757
Target:  5'- --cGCGGUGucGAGCUGAcuCCGCaGAUCGg -3'
miRNA:   3'- ccaCGCUAC--UUCGACU--GGCG-CUAGUu -5'
7265 5' -53 NC_001900.1 + 46014 0.71 0.507894
Target:  5'- --aGCGAUGGAGCgcgaaggcgagGACCGCGAg--- -3'
miRNA:   3'- ccaCGCUACUUCGa----------CUGGCGCUaguu -5'
7265 5' -53 NC_001900.1 + 22572 0.71 0.507894
Target:  5'- --aGCGAUcGGAGCUGACgGCGcauUCGAg -3'
miRNA:   3'- ccaCGCUA-CUUCGACUGgCGCu--AGUU- -5'
7265 5' -53 NC_001900.1 + 3063 0.73 0.396273
Target:  5'- aGUGCGGaGAgcaucuGGUUGAUCGCGGUCAGc -3'
miRNA:   3'- cCACGCUaCU------UCGACUGGCGCUAGUU- -5'
7265 5' -53 NC_001900.1 + 11159 0.73 0.385999
Target:  5'- --cGUGGUcgaccucuggaacGAGGCUGGCCGCGAUCu- -3'
miRNA:   3'- ccaCGCUA-------------CUUCGACUGGCGCUAGuu -5'
7265 5' -53 NC_001900.1 + 45754 0.73 0.368673
Target:  5'- aGGUGUGGUGAGGCcggccGGCCGUGAg--- -3'
miRNA:   3'- -CCACGCUACUUCGa----CUGGCGCUaguu -5'
7265 5' -53 NC_001900.1 + 2971 1 0.006235
Target:  5'- cGGUGCGAUGAAGCUGACCGCGAUa-- -3'
miRNA:   3'- -CCACGCUACUUCGACUGGCGCUAguu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.