Results 21 - 40 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7266 | 3' | -65.8 | NC_001900.1 | + | 17573 | 0.67 | 0.216298 |
Target: 5'- cAGCGGacCACCgaGCUGACCCaucgccugcaGACCGGa -3' miRNA: 3'- -UCGCCc-GUGGg-CGGCUGGG----------CUGGCCg -5' |
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7266 | 3' | -65.8 | NC_001900.1 | + | 18771 | 0.67 | 0.216298 |
Target: 5'- cAGCGGGCgaugACCCGCucgugaaggCGGCUu--CCGGCu -3' miRNA: 3'- -UCGCCCG----UGGGCG---------GCUGGgcuGGCCG- -5' |
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7266 | 3' | -65.8 | NC_001900.1 | + | 26011 | 0.67 | 0.21102 |
Target: 5'- gAGCagaaGGCACCCGCUGAgCgCGACgUGGa -3' miRNA: 3'- -UCGc---CCGUGGGCGGCUgG-GCUG-GCCg -5' |
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7266 | 3' | -65.8 | NC_001900.1 | + | 30799 | 0.67 | 0.205853 |
Target: 5'- aAGCuGGUggACCC-CCGGCCUuucggGGCCGGUg -3' miRNA: 3'- -UCGcCCG--UGGGcGGCUGGG-----CUGGCCG- -5' |
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7266 | 3' | -65.8 | NC_001900.1 | + | 1175 | 0.67 | 0.200797 |
Target: 5'- cGGCGGuGgAgCCGCCGGaagCGGCCGGg -3' miRNA: 3'- -UCGCC-CgUgGGCGGCUgg-GCUGGCCg -5' |
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7266 | 3' | -65.8 | NC_001900.1 | + | 11543 | 0.67 | 0.200797 |
Target: 5'- cGaaGGCACuccggCCGgCGACCCGAccCCGGUg -3' miRNA: 3'- uCgcCCGUG-----GGCgGCUGGGCU--GGCCG- -5' |
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7266 | 3' | -65.8 | NC_001900.1 | + | 11860 | 0.67 | 0.200797 |
Target: 5'- uGCaGGGCGaggaCGCCGACUCGAUCGcCg -3' miRNA: 3'- uCG-CCCGUgg--GCGGCUGGGCUGGCcG- -5' |
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7266 | 3' | -65.8 | NC_001900.1 | + | 9558 | 0.67 | 0.200797 |
Target: 5'- gGGUGGGauccgaacguCCCGCUGAUCCGGgUGGa -3' miRNA: 3'- -UCGCCCgu--------GGGCGGCUGGGCUgGCCg -5' |
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7266 | 3' | -65.8 | NC_001900.1 | + | 27572 | 0.67 | 0.199798 |
Target: 5'- aAGaCGGuGCGCCgcuacauCGCCGACggccggcucaaggCCGugCGGCu -3' miRNA: 3'- -UC-GCC-CGUGG-------GCGGCUG-------------GGCugGCCG- -5' |
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7266 | 3' | -65.8 | NC_001900.1 | + | 27261 | 0.67 | 0.197815 |
Target: 5'- --aGGGguUuuGCCGaagcagcuugacugcGCCCGACCGGg -3' miRNA: 3'- ucgCCCguGggCGGC---------------UGGGCUGGCCg -5' |
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7266 | 3' | -65.8 | NC_001900.1 | + | 41743 | 0.67 | 0.195848 |
Target: 5'- cGGCGucggaGGUacACCCGaCCaaGCCCaGACCGGCg -3' miRNA: 3'- -UCGC-----CCG--UGGGC-GGc-UGGG-CUGGCCG- -5' |
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7266 | 3' | -65.8 | NC_001900.1 | + | 14276 | 0.67 | 0.195848 |
Target: 5'- gAGaCGGcGuCACCCGCCGugCuCGAaccaacCUGGCc -3' miRNA: 3'- -UC-GCC-C-GUGGGCGGCugG-GCU------GGCCG- -5' |
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7266 | 3' | -65.8 | NC_001900.1 | + | 16603 | 0.67 | 0.194385 |
Target: 5'- gAGCGGGagcugucgGCCgacguuccggucaaCGCCGACCUGAacgCGGCc -3' miRNA: 3'- -UCGCCCg-------UGG--------------GCGGCUGGGCUg--GCCG- -5' |
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7266 | 3' | -65.8 | NC_001900.1 | + | 30564 | 0.67 | 0.191007 |
Target: 5'- cGCuGGCA-CCGCUGguGCCCGacgugaGCCGGCc -3' miRNA: 3'- uCGcCCGUgGGCGGC--UGGGC------UGGCCG- -5' |
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7266 | 3' | -65.8 | NC_001900.1 | + | 960 | 0.67 | 0.191007 |
Target: 5'- cGCGa-CugCUGCUGGCCuaCGGCCGGCu -3' miRNA: 3'- uCGCccGugGGCGGCUGG--GCUGGCCG- -5' |
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7266 | 3' | -65.8 | NC_001900.1 | + | 3940 | 0.67 | 0.191007 |
Target: 5'- cGCcGGUACCCGCCuccacggcgaACgCGGCCGGUc -3' miRNA: 3'- uCGcCCGUGGGCGGc---------UGgGCUGGCCG- -5' |
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7266 | 3' | -65.8 | NC_001900.1 | + | 25000 | 0.67 | 0.191007 |
Target: 5'- cAGUGGGUAUCa-CCGGuuUGGCCGGUg -3' miRNA: 3'- -UCGCCCGUGGgcGGCUggGCUGGCCG- -5' |
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7266 | 3' | -65.8 | NC_001900.1 | + | 25089 | 0.68 | 0.181639 |
Target: 5'- -aCGGGCACCgGgaccaCCGGCCaaACCGGUg -3' miRNA: 3'- ucGCCCGUGGgC-----GGCUGGgcUGGCCG- -5' |
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7266 | 3' | -65.8 | NC_001900.1 | + | 14460 | 0.68 | 0.177109 |
Target: 5'- cGCGGGCACCgacacgaaacCGCCuGACCCcgaauacauccuGACCcgagccgccaucGGCg -3' miRNA: 3'- uCGCCCGUGG----------GCGG-CUGGG------------CUGG------------CCG- -5' |
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7266 | 3' | -65.8 | NC_001900.1 | + | 1360 | 0.68 | 0.177109 |
Target: 5'- cGCuGGCGgUCGCCGcCCgCGACCaGCa -3' miRNA: 3'- uCGcCCGUgGGCGGCuGG-GCUGGcCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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