miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7266 5' -57.2 NC_001900.1 + 11942 0.66 0.558553
Target:  5'- gGACuCGGCGa--UCGAGuCGGCGuCCUCg -3'
miRNA:   3'- aCUG-GCUGCacgAGUUC-GUCGC-GGAG- -5'
7266 5' -57.2 NC_001900.1 + 10263 0.66 0.557467
Target:  5'- uUGAUCaGGCG-GCUCucuGCGGCccugaugGCCUCa -3'
miRNA:   3'- -ACUGG-CUGCaCGAGuu-CGUCG-------CGGAG- -5'
7266 5' -57.2 NC_001900.1 + 30927 0.66 0.526253
Target:  5'- aGGCgcuCGACGUGCUgAAcaagaucgugauGCAGaaCGCCUCg -3'
miRNA:   3'- aCUG---GCUGCACGAgUU------------CGUC--GCGGAG- -5'
7266 5' -57.2 NC_001900.1 + 36136 0.66 0.526253
Target:  5'- aUGAUguUGACGUGCUCGGugAGCGaCUUCa -3'
miRNA:   3'- -ACUG--GCUGCACGAGUUcgUCGC-GGAG- -5'
7266 5' -57.2 NC_001900.1 + 20219 0.67 0.505113
Target:  5'- aGACCGGCGUaGC-CAcgcuGCAGC-UCUCg -3'
miRNA:   3'- aCUGGCUGCA-CGaGUu---CGUCGcGGAG- -5'
7266 5' -57.2 NC_001900.1 + 27413 0.67 0.49468
Target:  5'- -uACCGAUGggGCgCAu-CAGCGCCUCg -3'
miRNA:   3'- acUGGCUGCa-CGaGUucGUCGCGGAG- -5'
7266 5' -57.2 NC_001900.1 + 25519 0.67 0.474117
Target:  5'- gGugCGACGaccaaggaGCUgAuGguGCGCCUCg -3'
miRNA:   3'- aCugGCUGCa-------CGAgUuCguCGCGGAG- -5'
7266 5' -57.2 NC_001900.1 + 21688 0.67 0.468032
Target:  5'- aGcACCGAUGUGCcgacgcgaucuccgaUCcAGCAGUGCC-Cg -3'
miRNA:   3'- aC-UGGCUGCACG---------------AGuUCGUCGCGGaG- -5'
7266 5' -57.2 NC_001900.1 + 43484 0.67 0.463997
Target:  5'- cGGCCGGCcaGCUCGGuGCGcCGCCUg -3'
miRNA:   3'- aCUGGCUGcaCGAGUU-CGUcGCGGAg -5'
7266 5' -57.2 NC_001900.1 + 42924 0.68 0.451013
Target:  5'- -cGCCGACGUacgggaagugGCUC-AGCAGCacguuggugugaccGCCUCc -3'
miRNA:   3'- acUGGCUGCA----------CGAGuUCGUCG--------------CGGAG- -5'
7266 5' -57.2 NC_001900.1 + 30485 0.68 0.448045
Target:  5'- cGACCGGCGcggguuccUGCUCGacguggaguacucgcAGCAGCuuGCCg- -3'
miRNA:   3'- aCUGGCUGC--------ACGAGU---------------UCGUCG--CGGag -5'
7266 5' -57.2 NC_001900.1 + 627 0.68 0.444105
Target:  5'- aGACCGuC-UGgUCGAGCccggAGCGCCUUc -3'
miRNA:   3'- aCUGGCuGcACgAGUUCG----UCGCGGAG- -5'
7266 5' -57.2 NC_001900.1 + 13004 0.68 0.444105
Target:  5'- cUGACCaACGUGgUCAgcGGCGGCGgCg- -3'
miRNA:   3'- -ACUGGcUGCACgAGU--UCGUCGCgGag -5'
7266 5' -57.2 NC_001900.1 + 27912 0.68 0.43337
Target:  5'- gGACCGACGaGUUCGcggaacuGGCuacaacggAGCGCCUg -3'
miRNA:   3'- aCUGGCUGCaCGAGU-------UCG--------UCGCGGAg -5'
7266 5' -57.2 NC_001900.1 + 48387 0.68 0.4247
Target:  5'- gGACCGGUGaGUcgagCGGGUAGCGCCUUa -3'
miRNA:   3'- aCUGGCUGCaCGa---GUUCGUCGCGGAG- -5'
7266 5' -57.2 NC_001900.1 + 6862 0.68 0.4247
Target:  5'- uUGGCC-AgGUGCUCAAGCAccacauccUGCCUCc -3'
miRNA:   3'- -ACUGGcUgCACGAGUUCGUc-------GCGGAG- -5'
7266 5' -57.2 NC_001900.1 + 38030 0.68 0.415189
Target:  5'- aGACCGGacUGUGagugaauccaucCUCGAGgaagcuCAGCGCCUCa -3'
miRNA:   3'- aCUGGCU--GCAC------------GAGUUC------GUCGCGGAG- -5'
7266 5' -57.2 NC_001900.1 + 30881 0.68 0.415189
Target:  5'- cGACCuccAgGUGCUCGAcCGGUGCUUCg -3'
miRNA:   3'- aCUGGc--UgCACGAGUUcGUCGCGGAG- -5'
7266 5' -57.2 NC_001900.1 + 39803 0.69 0.378489
Target:  5'- gUGAUCuuGGcCGUGCUCAGGCcG-GCCUCg -3'
miRNA:   3'- -ACUGG--CU-GCACGAGUUCGuCgCGGAG- -5'
7266 5' -57.2 NC_001900.1 + 27552 0.69 0.36966
Target:  5'- -cGCCGACGgccgGCUCAAgGCcguGCGgCUCg -3'
miRNA:   3'- acUGGCUGCa---CGAGUU-CGu--CGCgGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.