miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7267 5' -57.4 NC_001900.1 + 3512 0.66 0.576694
Target:  5'- gGUGCCguugagguucaGGGUGUACGUgcCACCuGuGGCCc -3'
miRNA:   3'- aCGUGG-----------UCCACAUGUA--GUGGcC-CCGG- -5'
7267 5' -57.4 NC_001900.1 + 6141 0.66 0.576694
Target:  5'- aGUACCuacAGGcGUACAUCGCCaGGaauggaGCCc -3'
miRNA:   3'- aCGUGG---UCCaCAUGUAGUGGcCC------CGG- -5'
7267 5' -57.4 NC_001900.1 + 28864 0.66 0.555115
Target:  5'- gUGgACCAGGUGUuCGaggcccUCACCaaggaGGGGUa -3'
miRNA:   3'- -ACgUGGUCCACAuGU------AGUGG-----CCCCGg -5'
7267 5' -57.4 NC_001900.1 + 39663 0.66 0.554042
Target:  5'- aGCACCGGGUucauccggcaccuGUGaugUAUCGCCGuGGGa- -3'
miRNA:   3'- aCGUGGUCCA-------------CAU---GUAGUGGC-CCCgg -5'
7267 5' -57.4 NC_001900.1 + 8777 0.66 0.548686
Target:  5'- cGCGCCGacGUGaaggaguucgaggcaUACGUCGacucCUGGGGCCg -3'
miRNA:   3'- aCGUGGUc-CAC---------------AUGUAGU----GGCCCCGG- -5'
7267 5' -57.4 NC_001900.1 + 29686 0.66 0.544413
Target:  5'- aGCGCaacGG-GUACAUCAucaacCCGauGGGCCg -3'
miRNA:   3'- aCGUGgu-CCaCAUGUAGU-----GGC--CCCGG- -5'
7267 5' -57.4 NC_001900.1 + 29937 0.66 0.541215
Target:  5'- cUGC-CCuGGUaGUcgaucgaggccaugACGUgACCGGGGUCa -3'
miRNA:   3'- -ACGuGGuCCA-CA--------------UGUAgUGGCCCCGG- -5'
7267 5' -57.4 NC_001900.1 + 3623 0.66 0.533778
Target:  5'- aUGCACCAGGc---CGUUACCGGccccgagcGCCg -3'
miRNA:   3'- -ACGUGGUCCacauGUAGUGGCCc-------CGG- -5'
7267 5' -57.4 NC_001900.1 + 39421 0.67 0.523218
Target:  5'- aGCAgccuugaacuCCcGGUgGUGCGUggcgCACCGuGGGCCg -3'
miRNA:   3'- aCGU----------GGuCCA-CAUGUA----GUGGC-CCCGG- -5'
7267 5' -57.4 NC_001900.1 + 15007 0.67 0.51274
Target:  5'- cUGCugCGGucggguauGUGUACGUCGCCGaagcaGGCa -3'
miRNA:   3'- -ACGugGUC--------CACAUGUAGUGGCc----CCGg -5'
7267 5' -57.4 NC_001900.1 + 19256 0.67 0.502349
Target:  5'- gUGUcCCAGGUa-GCGagCACCGGGGUa -3'
miRNA:   3'- -ACGuGGUCCAcaUGUa-GUGGCCCCGg -5'
7267 5' -57.4 NC_001900.1 + 23511 0.67 0.502349
Target:  5'- gGCACCAuccccGGUGaggcUGCAggccUCuuCCGGGGCg -3'
miRNA:   3'- aCGUGGU-----CCAC----AUGU----AGu-GGCCCCGg -5'
7267 5' -57.4 NC_001900.1 + 40888 0.67 0.492051
Target:  5'- cGCACCAcGGUGUGgGaCGCCcuGGCUg -3'
miRNA:   3'- aCGUGGU-CCACAUgUaGUGGccCCGG- -5'
7267 5' -57.4 NC_001900.1 + 1288 0.67 0.481852
Target:  5'- -aCACCAccGGUGccUGCGUUGCCGGuGCCu -3'
miRNA:   3'- acGUGGU--CCAC--AUGUAGUGGCCcCGG- -5'
7267 5' -57.4 NC_001900.1 + 38545 0.67 0.471756
Target:  5'- gUGCgACCGuGuUGUACA--GCCGGGGCUu -3'
miRNA:   3'- -ACG-UGGUcC-ACAUGUagUGGCCCCGG- -5'
7267 5' -57.4 NC_001900.1 + 28767 0.68 0.451893
Target:  5'- --gGCCAGGagcugcccugGUACAUCGCCGaggaGGGCa -3'
miRNA:   3'- acgUGGUCCa---------CAUGUAGUGGC----CCCGg -5'
7267 5' -57.4 NC_001900.1 + 1227 0.69 0.404335
Target:  5'- gGCACCGguGGUGUAC-UCGgUGGcGGCg -3'
miRNA:   3'- aCGUGGU--CCACAUGuAGUgGCC-CCGg -5'
7267 5' -57.4 NC_001900.1 + 29828 0.69 0.395209
Target:  5'- --gGCCGGGUcUACggCGgUGGGGCCa -3'
miRNA:   3'- acgUGGUCCAcAUGuaGUgGCCCCGG- -5'
7267 5' -57.4 NC_001900.1 + 19432 0.69 0.368641
Target:  5'- aGCGCCAGGU--ACAggUACCGGGuaCCg -3'
miRNA:   3'- aCGUGGUCCAcaUGUa-GUGGCCCc-GG- -5'
7267 5' -57.4 NC_001900.1 + 24599 0.7 0.360062
Target:  5'- aUGUugUAGGUGUACG-CGCCGaccGCCg -3'
miRNA:   3'- -ACGugGUCCACAUGUaGUGGCcc-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.