Results 1 - 20 of 23 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
7267 | 5' | -57.4 | NC_001900.1 | + | 3512 | 0.66 | 0.576694 |
Target: 5'- gGUGCCguugagguucaGGGUGUACGUgcCACCuGuGGCCc -3' miRNA: 3'- aCGUGG-----------UCCACAUGUA--GUGGcC-CCGG- -5' |
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7267 | 5' | -57.4 | NC_001900.1 | + | 6141 | 0.66 | 0.576694 |
Target: 5'- aGUACCuacAGGcGUACAUCGCCaGGaauggaGCCc -3' miRNA: 3'- aCGUGG---UCCaCAUGUAGUGGcCC------CGG- -5' |
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7267 | 5' | -57.4 | NC_001900.1 | + | 28864 | 0.66 | 0.555115 |
Target: 5'- gUGgACCAGGUGUuCGaggcccUCACCaaggaGGGGUa -3' miRNA: 3'- -ACgUGGUCCACAuGU------AGUGG-----CCCCGg -5' |
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7267 | 5' | -57.4 | NC_001900.1 | + | 39663 | 0.66 | 0.554042 |
Target: 5'- aGCACCGGGUucauccggcaccuGUGaugUAUCGCCGuGGGa- -3' miRNA: 3'- aCGUGGUCCA-------------CAU---GUAGUGGC-CCCgg -5' |
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7267 | 5' | -57.4 | NC_001900.1 | + | 8777 | 0.66 | 0.548686 |
Target: 5'- cGCGCCGacGUGaaggaguucgaggcaUACGUCGacucCUGGGGCCg -3' miRNA: 3'- aCGUGGUc-CAC---------------AUGUAGU----GGCCCCGG- -5' |
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7267 | 5' | -57.4 | NC_001900.1 | + | 29686 | 0.66 | 0.544413 |
Target: 5'- aGCGCaacGG-GUACAUCAucaacCCGauGGGCCg -3' miRNA: 3'- aCGUGgu-CCaCAUGUAGU-----GGC--CCCGG- -5' |
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7267 | 5' | -57.4 | NC_001900.1 | + | 29937 | 0.66 | 0.541215 |
Target: 5'- cUGC-CCuGGUaGUcgaucgaggccaugACGUgACCGGGGUCa -3' miRNA: 3'- -ACGuGGuCCA-CA--------------UGUAgUGGCCCCGG- -5' |
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7267 | 5' | -57.4 | NC_001900.1 | + | 3623 | 0.66 | 0.533778 |
Target: 5'- aUGCACCAGGc---CGUUACCGGccccgagcGCCg -3' miRNA: 3'- -ACGUGGUCCacauGUAGUGGCCc-------CGG- -5' |
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7267 | 5' | -57.4 | NC_001900.1 | + | 39421 | 0.67 | 0.523218 |
Target: 5'- aGCAgccuugaacuCCcGGUgGUGCGUggcgCACCGuGGGCCg -3' miRNA: 3'- aCGU----------GGuCCA-CAUGUA----GUGGC-CCCGG- -5' |
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7267 | 5' | -57.4 | NC_001900.1 | + | 15007 | 0.67 | 0.51274 |
Target: 5'- cUGCugCGGucggguauGUGUACGUCGCCGaagcaGGCa -3' miRNA: 3'- -ACGugGUC--------CACAUGUAGUGGCc----CCGg -5' |
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7267 | 5' | -57.4 | NC_001900.1 | + | 19256 | 0.67 | 0.502349 |
Target: 5'- gUGUcCCAGGUa-GCGagCACCGGGGUa -3' miRNA: 3'- -ACGuGGUCCAcaUGUa-GUGGCCCCGg -5' |
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7267 | 5' | -57.4 | NC_001900.1 | + | 23511 | 0.67 | 0.502349 |
Target: 5'- gGCACCAuccccGGUGaggcUGCAggccUCuuCCGGGGCg -3' miRNA: 3'- aCGUGGU-----CCAC----AUGU----AGu-GGCCCCGg -5' |
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7267 | 5' | -57.4 | NC_001900.1 | + | 40888 | 0.67 | 0.492051 |
Target: 5'- cGCACCAcGGUGUGgGaCGCCcuGGCUg -3' miRNA: 3'- aCGUGGU-CCACAUgUaGUGGccCCGG- -5' |
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7267 | 5' | -57.4 | NC_001900.1 | + | 1288 | 0.67 | 0.481852 |
Target: 5'- -aCACCAccGGUGccUGCGUUGCCGGuGCCu -3' miRNA: 3'- acGUGGU--CCAC--AUGUAGUGGCCcCGG- -5' |
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7267 | 5' | -57.4 | NC_001900.1 | + | 38545 | 0.67 | 0.471756 |
Target: 5'- gUGCgACCGuGuUGUACA--GCCGGGGCUu -3' miRNA: 3'- -ACG-UGGUcC-ACAUGUagUGGCCCCGG- -5' |
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7267 | 5' | -57.4 | NC_001900.1 | + | 28767 | 0.68 | 0.451893 |
Target: 5'- --gGCCAGGagcugcccugGUACAUCGCCGaggaGGGCa -3' miRNA: 3'- acgUGGUCCa---------CAUGUAGUGGC----CCCGg -5' |
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7267 | 5' | -57.4 | NC_001900.1 | + | 1227 | 0.69 | 0.404335 |
Target: 5'- gGCACCGguGGUGUAC-UCGgUGGcGGCg -3' miRNA: 3'- aCGUGGU--CCACAUGuAGUgGCC-CCGg -5' |
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7267 | 5' | -57.4 | NC_001900.1 | + | 29828 | 0.69 | 0.395209 |
Target: 5'- --gGCCGGGUcUACggCGgUGGGGCCa -3' miRNA: 3'- acgUGGUCCAcAUGuaGUgGCCCCGG- -5' |
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7267 | 5' | -57.4 | NC_001900.1 | + | 19432 | 0.69 | 0.368641 |
Target: 5'- aGCGCCAGGU--ACAggUACCGGGuaCCg -3' miRNA: 3'- aCGUGGUCCAcaUGUa-GUGGCCCc-GG- -5' |
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7267 | 5' | -57.4 | NC_001900.1 | + | 24599 | 0.7 | 0.360062 |
Target: 5'- aUGUugUAGGUGUACG-CGCCGaccGCCg -3' miRNA: 3'- -ACGugGUCCACAUGUaGUGGCcc-CGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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