miRNA: 3'- -ACgUGGUCCACAuGU------AGUGG-----CCCCGg -5'
miRNA: 3'- aCGUGG-----------UCCACAUGUA--GUGGcC-CCGG- -5'
miRNA: 3'- aCGUGG---UCCaCAUGUAGUGGcCC------CGG- -5'
Results 21 - 23 of 23 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 7267 | 5' | -57.4 | NC_001900.1 | + | 28864 | 0.66 | 0.555115 |
|
Target: 5'- gUGgACCAGGUGUuCGaggcccUCACCaaggaGGGGUa -3' miRNA: 3'- -ACgUGGUCCACAuGU------AGUGG-----CCCCGg -5' |
|||||||
| 7267 | 5' | -57.4 | NC_001900.1 | + | 3512 | 0.66 | 0.576694 |
|
Target: 5'- gGUGCCguugagguucaGGGUGUACGUgcCACCuGuGGCCc -3' miRNA: 3'- aCGUGG-----------UCCACAUGUA--GUGGcC-CCGG- -5' |
|||||||
| 7267 | 5' | -57.4 | NC_001900.1 | + | 6141 | 0.66 | 0.576694 |
|
Target: 5'- aGUACCuacAGGcGUACAUCGCCaGGaauggaGCCc -3' miRNA: 3'- aCGUGG---UCCaCAUGUAGUGGcCC------CGG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home