Results 21 - 27 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7268 | 3' | -54.1 | NC_001900.1 | + | 3818 | 0.66 | 0.724674 |
Target: 5'- gCGCCGcgagguCACCUUGAGCUggaAGUUCa -3' miRNA: 3'- aGUGGCu-----GUGGGACUUGAaggUCGAG- -5' |
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7268 | 3' | -54.1 | NC_001900.1 | + | 33748 | 0.67 | 0.691689 |
Target: 5'- -gGCCGACaacGCUgUGAGCUUCaCGGC-Ca -3' miRNA: 3'- agUGGCUG---UGGgACUUGAAG-GUCGaG- -5' |
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7268 | 3' | -54.1 | NC_001900.1 | + | 44628 | 0.68 | 0.624407 |
Target: 5'- uUCACCGAggagACCCcGAACUUCgAGUg- -3' miRNA: 3'- -AGUGGCUg---UGGGaCUUGAAGgUCGag -5' |
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7268 | 3' | -54.1 | NC_001900.1 | + | 21618 | 0.68 | 0.579543 |
Target: 5'- cCGCgucaGACACCUUGAGCgugugagccgUUCgGGCUCg -3' miRNA: 3'- aGUGg---CUGUGGGACUUG----------AAGgUCGAG- -5' |
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7268 | 3' | -54.1 | NC_001900.1 | + | 47883 | 0.69 | 0.568417 |
Target: 5'- aCACCGuucguCGCaCCUGAGCUgucgaCGGUUCg -3' miRNA: 3'- aGUGGCu----GUG-GGACUUGAag---GUCGAG- -5' |
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7268 | 3' | -54.1 | NC_001900.1 | + | 40498 | 0.77 | 0.180769 |
Target: 5'- gCACCGGCGCCCcgcUGGugUUCCugcacgGGCUCu -3' miRNA: 3'- aGUGGCUGUGGG---ACUugAAGG------UCGAG- -5' |
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7268 | 3' | -54.1 | NC_001900.1 | + | 39130 | 0.66 | 0.746203 |
Target: 5'- cCACCGGCAUCgCgGAGgUcaUCCAGCg- -3' miRNA: 3'- aGUGGCUGUGG-GaCUUgA--AGGUCGag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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