miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7268 5' -56.3 NC_001900.1 + 46474 0.66 0.682954
Target:  5'- aCGCGGCGUaaUCGccgUCGAUGAuGaacccuUCGGc -3'
miRNA:   3'- aGCGCCGCG--AGCa--AGCUACUcC------AGCC- -5'
7268 5' -56.3 NC_001900.1 + 34409 0.66 0.672204
Target:  5'- cUCGCGGCGUUCGUUacc-GAcGcCGGg -3'
miRNA:   3'- -AGCGCCGCGAGCAAgcuaCUcCaGCC- -5'
7268 5' -56.3 NC_001900.1 + 46406 0.66 0.661417
Target:  5'- gCGCGGCaacccGUccgCGUgggaCGAcGAGGUCGGu -3'
miRNA:   3'- aGCGCCG-----CGa--GCAa---GCUaCUCCAGCC- -5'
7268 5' -56.3 NC_001900.1 + 36993 0.66 0.661417
Target:  5'- ---aGGUGCUgUGgUCGAUgGAGGUCGGc -3'
miRNA:   3'- agcgCCGCGA-GCaAGCUA-CUCCAGCC- -5'
7268 5' -56.3 NC_001900.1 + 46170 0.66 0.661417
Target:  5'- -aGCGGCaGCuUCGagguggUCGAUGAGGaUCuGGc -3'
miRNA:   3'- agCGCCG-CG-AGCa-----AGCUACUCC-AG-CC- -5'
7268 5' -56.3 NC_001900.1 + 10416 0.67 0.628938
Target:  5'- uUCGCGGCGUaCG-UCGggGuGcUCGGg -3'
miRNA:   3'- -AGCGCCGCGaGCaAGCuaCuCcAGCC- -5'
7268 5' -56.3 NC_001900.1 + 46165 0.67 0.596482
Target:  5'- uUCGCGGCGaagcCGUUgguaCGggGAGGuuUCGGc -3'
miRNA:   3'- -AGCGCCGCga--GCAA----GCuaCUCC--AGCC- -5'
7268 5' -56.3 NC_001900.1 + 22564 0.68 0.574977
Target:  5'- uUCGCGGCGCUCGauguucagCGccucAUGuAGaaGUCGGa -3'
miRNA:   3'- -AGCGCCGCGAGCaa------GC----UAC-UC--CAGCC- -5'
7268 5' -56.3 NC_001900.1 + 23135 0.69 0.511783
Target:  5'- cUCGCGGUGUcccgcagccacUCGaucucgUCGcUGAGGUCGa -3'
miRNA:   3'- -AGCGCCGCG-----------AGCa-----AGCuACUCCAGCc -5'
7268 5' -56.3 NC_001900.1 + 11240 0.72 0.344217
Target:  5'- aUCGCGGCcagcCUCGUUCca-GAGGUCGc -3'
miRNA:   3'- -AGCGCCGc---GAGCAAGcuaCUCCAGCc -5'
7268 5' -56.3 NC_001900.1 + 3761 1.1 0.000771
Target:  5'- cUCGCGGCGCUCGUUCGAUGAGGUCGGc -3'
miRNA:   3'- -AGCGCCGCGAGCAAGCUACUCCAGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.