miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7269 3' -59.1 NC_001900.1 + 21326 0.67 0.496257
Target:  5'- aCCG--ACCgCGCCgagCACGGCGAGCugGCu -3'
miRNA:   3'- -GGCcaUGG-GCGGag-GUGCCGCUUG--CG- -5'
7269 3' -59.1 NC_001900.1 + 10428 0.67 0.496257
Target:  5'- gCGGcgUCaGCCUUCGCGGCGuACGUc -3'
miRNA:   3'- gGCCauGGgCGGAGGUGCCGCuUGCG- -5'
7269 3' -59.1 NC_001900.1 + 11584 0.67 0.495261
Target:  5'- gCGGUGucggacauguguuUUCGCCUCCugGGC-AugGUu -3'
miRNA:   3'- gGCCAU-------------GGGCGGAGGugCCGcUugCG- -5'
7269 3' -59.1 NC_001900.1 + 24121 0.67 0.486336
Target:  5'- gCCGGgaUAgCCGCCUCgGCaccgaGGUuGGCGCg -3'
miRNA:   3'- -GGCC--AUgGGCGGAGgUG-----CCGcUUGCG- -5'
7269 3' -59.1 NC_001900.1 + 46861 0.67 0.47651
Target:  5'- aCuGUGCCUuGCCUU--CGGCGAACGUc -3'
miRNA:   3'- gGcCAUGGG-CGGAGguGCCGCUUGCG- -5'
7269 3' -59.1 NC_001900.1 + 39546 0.67 0.47651
Target:  5'- cCCGGUACCCcggaguCCUCUucGCGGCucuccccauCGCu -3'
miRNA:   3'- -GGCCAUGGGc-----GGAGG--UGCCGcuu------GCG- -5'
7269 3' -59.1 NC_001900.1 + 41157 0.67 0.47651
Target:  5'- uCCGGgucgaucGCCUuguGCgUCCagACGGuCGGACGCg -3'
miRNA:   3'- -GGCCa------UGGG---CGgAGG--UGCC-GCUUGCG- -5'
7269 3' -59.1 NC_001900.1 + 45646 0.67 0.47651
Target:  5'- gUGGacguucuuCuuGCCUUCACGGCGcacACGCu -3'
miRNA:   3'- gGCCau------GggCGGAGGUGCCGCu--UGCG- -5'
7269 3' -59.1 NC_001900.1 + 34765 0.67 0.465816
Target:  5'- gCGGUGuuCGCCggucggcUCgCAUGGCGAugAUGCa -3'
miRNA:   3'- gGCCAUggGCGG-------AG-GUGCCGCU--UGCG- -5'
7269 3' -59.1 NC_001900.1 + 29718 0.67 0.457161
Target:  5'- gCGGUACagCCGCaagcucgCCAacgaGGCGaAGCGCa -3'
miRNA:   3'- gGCCAUG--GGCGga-----GGUg---CCGC-UUGCG- -5'
7269 3' -59.1 NC_001900.1 + 43787 0.67 0.447645
Target:  5'- cCCGGUcgGgCCGCUcCuCGCuGUGAGCGCg -3'
miRNA:   3'- -GGCCA--UgGGCGGaG-GUGcCGCUUGCG- -5'
7269 3' -59.1 NC_001900.1 + 31419 0.67 0.447645
Target:  5'- aUCGGUAgC-GCCUCaucaCGCGGC-AGCGCg -3'
miRNA:   3'- -GGCCAUgGgCGGAG----GUGCCGcUUGCG- -5'
7269 3' -59.1 NC_001900.1 + 7942 0.68 0.43824
Target:  5'- aCCGGUucaucaUCuaCUCCGCGGcCGGugGCc -3'
miRNA:   3'- -GGCCAug----GGcgGAGGUGCC-GCUugCG- -5'
7269 3' -59.1 NC_001900.1 + 28055 0.68 0.42895
Target:  5'- --cGUGCCCGCCggggGCGGCGucAACGUg -3'
miRNA:   3'- ggcCAUGGGCGGagg-UGCCGC--UUGCG- -5'
7269 3' -59.1 NC_001900.1 + 26111 0.68 0.42895
Target:  5'- gCaGUACCCGaCggCACGGCGGcACGCc -3'
miRNA:   3'- gGcCAUGGGCgGagGUGCCGCU-UGCG- -5'
7269 3' -59.1 NC_001900.1 + 14520 0.68 0.419776
Target:  5'- gUCGGUGCCCGCgaagaacccggaCggggcguggCCGaacucaagGGCGAACGCg -3'
miRNA:   3'- -GGCCAUGGGCG------------Ga--------GGUg-------CCGCUUGCG- -5'
7269 3' -59.1 NC_001900.1 + 42021 0.68 0.418866
Target:  5'- cCCGG-ACUCGCucaacguCUCCACGGUcaagaaccggGGugGCa -3'
miRNA:   3'- -GGCCaUGGGCG-------GAGGUGCCG----------CUugCG- -5'
7269 3' -59.1 NC_001900.1 + 1268 0.68 0.417047
Target:  5'- gCCGGUGCcuaaaccgccccggCCGCUUCCGgCGGCccacCGCc -3'
miRNA:   3'- -GGCCAUG--------------GGCGGAGGU-GCCGcuu-GCG- -5'
7269 3' -59.1 NC_001900.1 + 15098 0.68 0.410723
Target:  5'- gCGGUGCCUGCUUC---GGCGA-CGUa -3'
miRNA:   3'- gGCCAUGGGCGGAGgugCCGCUuGCG- -5'
7269 3' -59.1 NC_001900.1 + 34703 0.68 0.410723
Target:  5'- aCCGGcgaACaCCGCCUgCCACcacacacuGcGCGAugGCg -3'
miRNA:   3'- -GGCCa--UG-GGCGGA-GGUG--------C-CGCUugCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.