miRNA display CGI


Results 21 - 40 of 58 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7269 5' -56.6 NC_001900.1 + 43047 0.67 0.544413
Target:  5'- cCGCGaGGCuucgcgucccCCUCGAcggAGGCgGUCACa -3'
miRNA:   3'- aGUGC-CCGu---------GGAGCU---UCCGgUAGUGg -5'
7269 5' -56.6 NC_001900.1 + 6191 0.67 0.544413
Target:  5'- cUCG-GGGUuggcuGCCUCGAucuGGGCCAgCACg -3'
miRNA:   3'- -AGUgCCCG-----UGGAGCU---UCCGGUaGUGg -5'
7269 5' -56.6 NC_001900.1 + 21383 0.67 0.533778
Target:  5'- -gAUGGGUAUCUCGcuucccauugcGGGGCUugaggacaucGUCACCg -3'
miRNA:   3'- agUGCCCGUGGAGC-----------UUCCGG----------UAGUGG- -5'
7269 5' -56.6 NC_001900.1 + 9368 0.67 0.533778
Target:  5'- -gACGGGCACCgugacgcCGAuGGCCucugGUCGgCg -3'
miRNA:   3'- agUGCCCGUGGa------GCUuCCGG----UAGUgG- -5'
7269 5' -56.6 NC_001900.1 + 6631 0.68 0.522167
Target:  5'- gCACGGGCcaGCC-CGAuccccucGGGCC-UgGCCu -3'
miRNA:   3'- aGUGCCCG--UGGaGCU-------UCCGGuAgUGG- -5'
7269 5' -56.6 NC_001900.1 + 3645 0.68 0.522167
Target:  5'- aCGCGGGgAacagCGAgaccggaugcaccAGGCCGUUACCg -3'
miRNA:   3'- aGUGCCCgUgga-GCU-------------UCCGGUAGUGG- -5'
7269 5' -56.6 NC_001900.1 + 23965 0.68 0.481852
Target:  5'- aCGCGGGUGaccgaaCUCGggGuGCCcUgGCCg -3'
miRNA:   3'- aGUGCCCGUg-----GAGCuuC-CGGuAgUGG- -5'
7269 5' -56.6 NC_001900.1 + 24773 0.68 0.481852
Target:  5'- gCGCGGGCGgCaaaGggGGCgA-CACCa -3'
miRNA:   3'- aGUGCCCGUgGag-CuuCCGgUaGUGG- -5'
7269 5' -56.6 NC_001900.1 + 21051 0.68 0.471756
Target:  5'- uUCcUGGGCACCagccCGAGGGCuCcgCACg -3'
miRNA:   3'- -AGuGCCCGUGGa---GCUUCCG-GuaGUGg -5'
7269 5' -56.6 NC_001900.1 + 5394 0.68 0.471756
Target:  5'- --uCGGGUuggugcagucgGCCUgGAugAGGCCGUCACg -3'
miRNA:   3'- aguGCCCG-----------UGGAgCU--UCCGGUAGUGg -5'
7269 5' -56.6 NC_001900.1 + 12532 0.69 0.455829
Target:  5'- aUCGCc-GCGCCgucgaacgccaucgCGAAGGCgGUCGCCa -3'
miRNA:   3'- -AGUGccCGUGGa-------------GCUUCCGgUAGUGG- -5'
7269 5' -56.6 NC_001900.1 + 5724 0.69 0.451893
Target:  5'- -gGCGGGCucaccaACCUCGAugaccGCCGaCGCCg -3'
miRNA:   3'- agUGCCCG------UGGAGCUuc---CGGUaGUGG- -5'
7269 5' -56.6 NC_001900.1 + 14458 0.69 0.442135
Target:  5'- uUCGCGGGCACCgacaCGAAaccGCC-UgACCc -3'
miRNA:   3'- -AGUGCCCGUGGa---GCUUc--CGGuAgUGG- -5'
7269 5' -56.6 NC_001900.1 + 10416 0.69 0.442134
Target:  5'- uUCGCGGcGUACgUCGggGuGCUcggGUCACg -3'
miRNA:   3'- -AGUGCC-CGUGgAGCuuC-CGG---UAGUGg -5'
7269 5' -56.6 NC_001900.1 + 33876 0.69 0.432496
Target:  5'- aCGaaGGaCACCUUGGucgAGGCCGUgGCCg -3'
miRNA:   3'- aGUgcCC-GUGGAGCU---UCCGGUAgUGG- -5'
7269 5' -56.6 NC_001900.1 + 17835 0.69 0.432496
Target:  5'- aCGCuGGuCACCUCGcucGGCCcgUACCu -3'
miRNA:   3'- aGUGcCC-GUGGAGCuu-CCGGuaGUGG- -5'
7269 5' -56.6 NC_001900.1 + 8146 0.69 0.422982
Target:  5'- aUCGCGuGGC-CUUCGuuGGCC-UUGCCg -3'
miRNA:   3'- -AGUGC-CCGuGGAGCuuCCGGuAGUGG- -5'
7269 5' -56.6 NC_001900.1 + 3121 0.69 0.422982
Target:  5'- -gGCGGGUGCCcgcUCGAucuccAGGCggaccCGUCGCCg -3'
miRNA:   3'- agUGCCCGUGG---AGCU-----UCCG-----GUAGUGG- -5'
7269 5' -56.6 NC_001900.1 + 46659 0.69 0.413594
Target:  5'- -gACGGGCugACCUuccgUGAGGcugcccaccaaGCCAUCGCCa -3'
miRNA:   3'- agUGCCCG--UGGA----GCUUC-----------CGGUAGUGG- -5'
7269 5' -56.6 NC_001900.1 + 34809 0.69 0.412662
Target:  5'- uUCGCGGGCACaccggcucaggauCUCGGAgaccucGGUCAgcaucuUCGCCa -3'
miRNA:   3'- -AGUGCCCGUG-------------GAGCUU------CCGGU------AGUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.