Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7270 | 3' | -57.6 | NC_001900.1 | + | 2369 | 0.71 | 0.308067 |
Target: 5'- -uCGAUCuGGCuGGCGUGuuCCGCCUCa- -3' miRNA: 3'- guGCUAG-CUG-CCGCACu-GGCGGAGcu -5' |
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7270 | 3' | -57.6 | NC_001900.1 | + | 3126 | 0.66 | 0.609743 |
Target: 5'- --gGGUCGGCGG-GUGcCCG-CUCGAu -3' miRNA: 3'- gugCUAGCUGCCgCACuGGCgGAGCU- -5' |
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7270 | 3' | -57.6 | NC_001900.1 | + | 4047 | 1.08 | 0.000758 |
Target: 5'- uCACGAUCGACGGCGUGACCGCCUCGAu -3' miRNA: 3'- -GUGCUAGCUGCCGCACUGGCGGAGCU- -5' |
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7270 | 3' | -57.6 | NC_001900.1 | + | 5227 | 0.66 | 0.588262 |
Target: 5'- aGCGGUCGuuccaGGCGcGugCGCCgUCGu -3' miRNA: 3'- gUGCUAGCug---CCGCaCugGCGG-AGCu -5' |
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7270 | 3' | -57.6 | NC_001900.1 | + | 5770 | 0.71 | 0.308067 |
Target: 5'- -uUGAUcCGGC-GCGUGACCGUUUCGAg -3' miRNA: 3'- guGCUA-GCUGcCGCACUGGCGGAGCU- -5' |
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7270 | 3' | -57.6 | NC_001900.1 | + | 5970 | 0.69 | 0.397648 |
Target: 5'- aACGG-CGACGGCauggGGCCGCCcgcuacgUCGAg -3' miRNA: 3'- gUGCUaGCUGCCGca--CUGGCGG-------AGCU- -5' |
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7270 | 3' | -57.6 | NC_001900.1 | + | 7144 | 0.67 | 0.535309 |
Target: 5'- uCACcGUCGugGGCGUagucGCgGaCCUCGAa -3' miRNA: 3'- -GUGcUAGCugCCGCAc---UGgC-GGAGCU- -5' |
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7270 | 3' | -57.6 | NC_001900.1 | + | 11780 | 0.71 | 0.339054 |
Target: 5'- aGCGAguUCaGCGGUGUGagcgucguucGCCGCCUUGAc -3' miRNA: 3'- gUGCU--AGcUGCCGCAC----------UGGCGGAGCU- -5' |
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7270 | 3' | -57.6 | NC_001900.1 | + | 12268 | 0.67 | 0.555267 |
Target: 5'- aCugGGUCGGCGaCGUGAgUGCCcaguggaUCGGu -3' miRNA: 3'- -GugCUAGCUGCcGCACUgGCGG-------AGCU- -5' |
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7270 | 3' | -57.6 | NC_001900.1 | + | 13774 | 0.73 | 0.239583 |
Target: 5'- uCGCGGcgUCGACuuggucaGGUGUGACCGCCagGAg -3' miRNA: 3'- -GUGCU--AGCUG-------CCGCACUGGCGGagCU- -5' |
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7270 | 3' | -57.6 | NC_001900.1 | + | 14510 | 0.66 | 0.57757 |
Target: 5'- cCGCcAUCGGCGGC---ACCGUCUCGu -3' miRNA: 3'- -GUGcUAGCUGCCGcacUGGCGGAGCu -5' |
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7270 | 3' | -57.6 | NC_001900.1 | + | 15203 | 0.7 | 0.355375 |
Target: 5'- aGCGugccUCGGCuGGUGUGGCCGaCgCUCGAc -3' miRNA: 3'- gUGCu---AGCUG-CCGCACUGGC-G-GAGCU- -5' |
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7270 | 3' | -57.6 | NC_001900.1 | + | 17086 | 0.66 | 0.588262 |
Target: 5'- uCAUGGUCu-CGGC-UG-CCGCCUUGAu -3' miRNA: 3'- -GUGCUAGcuGCCGcACuGGCGGAGCU- -5' |
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7270 | 3' | -57.6 | NC_001900.1 | + | 17125 | 0.67 | 0.535309 |
Target: 5'- -uCGAggaGACGGCGgucuUGGCCGCUUCc- -3' miRNA: 3'- guGCUag-CUGCCGC----ACUGGCGGAGcu -5' |
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7270 | 3' | -57.6 | NC_001900.1 | + | 21268 | 0.66 | 0.588262 |
Target: 5'- gCGCGGUCGGUGGCGcGAUCGaCCUg-- -3' miRNA: 3'- -GUGCUAGCUGCCGCaCUGGC-GGAgcu -5' |
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7270 | 3' | -57.6 | NC_001900.1 | + | 22598 | 0.7 | 0.36374 |
Target: 5'- --aGAUCGGCGGCgGUGAUuucaGCUUCGGc -3' miRNA: 3'- gugCUAGCUGCCG-CACUGg---CGGAGCU- -5' |
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7270 | 3' | -57.6 | NC_001900.1 | + | 26903 | 0.67 | 0.556324 |
Target: 5'- uCGCcGUCGGCGGUcUGGCCuucaGCCUCa- -3' miRNA: 3'- -GUGcUAGCUGCCGcACUGG----CGGAGcu -5' |
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7270 | 3' | -57.6 | NC_001900.1 | + | 29117 | 0.67 | 0.524906 |
Target: 5'- gCACGAUCGAgggagacgagauCGGCGUcuacACCGCCgaugucccCGAa -3' miRNA: 3'- -GUGCUAGCU------------GCCGCAc---UGGCGGa-------GCU- -5' |
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7270 | 3' | -57.6 | NC_001900.1 | + | 29663 | 0.67 | 0.535309 |
Target: 5'- -cCGAUgGGcCGGCGgcugccggugGACCGCuCUCGGa -3' miRNA: 3'- guGCUAgCU-GCCGCa---------CUGGCG-GAGCU- -5' |
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7270 | 3' | -57.6 | NC_001900.1 | + | 33128 | 0.69 | 0.407572 |
Target: 5'- gGCGGUagCGGCGGCgGUGGCCagcagcaccaGUCUCGGg -3' miRNA: 3'- gUGCUA--GCUGCCG-CACUGG----------CGGAGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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