miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7270 5' -55.3 NC_001900.1 + 1657 0.66 0.703461
Target:  5'- --aCGAGGAGGCgugguuCGGCAAGGgccacgUCCCGc -3'
miRNA:   3'- cagGCUUCUCCG------GCUGUUCU------AGGGCu -5'
7270 5' -55.3 NC_001900.1 + 4083 1.09 0.000889
Target:  5'- aGUCCGAAGAGGCCGACAAGAUCCCGAa -3'
miRNA:   3'- -CAGGCUUCUCCGGCUGUUCUAGGGCU- -5'
7270 5' -55.3 NC_001900.1 + 8262 0.68 0.582341
Target:  5'- cUCuCGAAGcgccGGCCGACAccccgaucuccgAGAUCCCu- -3'
miRNA:   3'- cAG-GCUUCu---CCGGCUGU------------UCUAGGGcu -5'
7270 5' -55.3 NC_001900.1 + 10026 0.69 0.496579
Target:  5'- cGUUCGAGGAcGCCGaagGCAAGAUCCa-- -3'
miRNA:   3'- -CAGGCUUCUcCGGC---UGUUCUAGGgcu -5'
7270 5' -55.3 NC_001900.1 + 11541 0.68 0.53888
Target:  5'- -aCCGAAGGcacuccGGCCGGCGAcccGAcCCCGGu -3'
miRNA:   3'- caGGCUUCU------CCGGCUGUU---CUaGGGCU- -5'
7270 5' -55.3 NC_001900.1 + 11866 0.69 0.528179
Target:  5'- --gCGAGGAcGCCGACucGAUCgCCGAg -3'
miRNA:   3'- cagGCUUCUcCGGCUGuuCUAG-GGCU- -5'
7270 5' -55.3 NC_001900.1 + 12185 0.7 0.46586
Target:  5'- cUUCGccGAGGCCGAgAAGAcCUCGAu -3'
miRNA:   3'- cAGGCuuCUCCGGCUgUUCUaGGGCU- -5'
7270 5' -55.3 NC_001900.1 + 14365 0.67 0.637531
Target:  5'- -aUCGAAGAGGUCGACGGcGAUgUgGAc -3'
miRNA:   3'- caGGCUUCUCCGGCUGUU-CUAgGgCU- -5'
7270 5' -55.3 NC_001900.1 + 15610 0.7 0.436157
Target:  5'- -cCCGGcgAGAGGCCGAacAGAUCCuCGu -3'
miRNA:   3'- caGGCU--UCUCCGGCUguUCUAGG-GCu -5'
7270 5' -55.3 NC_001900.1 + 16974 0.66 0.680549
Target:  5'- -gCCGAcaAGcGGCgCGGCGAuggcgacGAUCCCGAc -3'
miRNA:   3'- caGGCU--UCuCCG-GCUGUU-------CUAGGGCU- -5'
7270 5' -55.3 NC_001900.1 + 22122 0.7 0.4265
Target:  5'- --gCGAGGuGGGCCGAgAAGGacgcUCCCGAc -3'
miRNA:   3'- cagGCUUC-UCCGGCUgUUCU----AGGGCU- -5'
7270 5' -55.3 NC_001900.1 + 22894 0.73 0.321256
Target:  5'- -cCCGGAGAGGUcauCGGgGAGAUCCCc- -3'
miRNA:   3'- caGGCUUCUCCG---GCUgUUCUAGGGcu -5'
7270 5' -55.3 NC_001900.1 + 23447 0.72 0.362636
Target:  5'- cGUCCGuacGGAcccGGCCGACGAGAagacggUCaCCGAc -3'
miRNA:   3'- -CAGGCu--UCU---CCGGCUGUUCU------AG-GGCU- -5'
7270 5' -55.3 NC_001900.1 + 27899 0.71 0.389183
Target:  5'- aGUCCGAucgcuGGGccgcuGCCGugGcGAUCCCGAg -3'
miRNA:   3'- -CAGGCUu----CUC-----CGGCugUuCUAGGGCU- -5'
7270 5' -55.3 NC_001900.1 + 28271 0.67 0.593331
Target:  5'- gGUCCG-GGAGGgcuCCGugGAGA-CCCGc -3'
miRNA:   3'- -CAGGCuUCUCC---GGCugUUCUaGGGCu -5'
7270 5' -55.3 NC_001900.1 + 31152 0.66 0.681646
Target:  5'- cGUUCGAccGAGGCCGACGAauGAaCgCGAg -3'
miRNA:   3'- -CAGGCUu-CUCCGGCUGUU--CUaGgGCU- -5'
7270 5' -55.3 NC_001900.1 + 31543 0.7 0.454845
Target:  5'- cGUCCGggGGaucuaccacugauGGCCGAUcGGAUCCaGGu -3'
miRNA:   3'- -CAGGCuuCU-------------CCGGCUGuUCUAGGgCU- -5'
7270 5' -55.3 NC_001900.1 + 33281 0.68 0.582341
Target:  5'- cGUCaCGGAGGcucuGGUCGACcugggcguuGAUCCCGAc -3'
miRNA:   3'- -CAG-GCUUCU----CCGGCUGuu-------CUAGGGCU- -5'
7270 5' -55.3 NC_001900.1 + 34300 0.69 0.528179
Target:  5'- aUCCGAAGA-GCCGA-GAGGUUCUGGa -3'
miRNA:   3'- cAGGCUUCUcCGGCUgUUCUAGGGCU- -5'
7270 5' -55.3 NC_001900.1 + 34907 0.66 0.681646
Target:  5'- --gCGAAGAuGCUGAcCGAGGUCuCCGAg -3'
miRNA:   3'- cagGCUUCUcCGGCU-GUUCUAG-GGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.