miRNA display CGI


Results 21 - 39 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7271 5' -57.6 NC_001900.1 + 25454 0.68 0.430106
Target:  5'- cUCCuuGGUCGuC-GCACCGGCCUGAGc -3'
miRNA:   3'- -AGGu-CCGGCuGaCGUGGUUGGGCUUa -5'
7271 5' -57.6 NC_001900.1 + 41966 0.68 0.430106
Target:  5'- gUCCGGGCCGAa-GCcguCCGACUCGcGAUg -3'
miRNA:   3'- -AGGUCCGGCUgaCGu--GGUUGGGC-UUA- -5'
7271 5' -57.6 NC_001900.1 + 54 0.68 0.420543
Target:  5'- -aCGGGCCGACgcuagaGCGCCucGCCCa--- -3'
miRNA:   3'- agGUCCGGCUGa-----CGUGGu-UGGGcuua -5'
7271 5' -57.6 NC_001900.1 + 33187 0.68 0.383612
Target:  5'- aCCAagauGGCCGAUcacuCGCCAACCUGggUg -3'
miRNA:   3'- aGGU----CCGGCUGac--GUGGUUGGGCuuA- -5'
7271 5' -57.6 NC_001900.1 + 43181 0.69 0.357363
Target:  5'- cUCUGGGCUGGCUGCugaACCGGCCaGGc- -3'
miRNA:   3'- -AGGUCCGGCUGACG---UGGUUGGgCUua -5'
7271 5' -57.6 NC_001900.1 + 30113 0.69 0.335654
Target:  5'- gUCCAGGaacgucuggacccaCGACgUGCGCCAcuuCCCGAGc -3'
miRNA:   3'- -AGGUCCg-------------GCUG-ACGUGGUu--GGGCUUa -5'
7271 5' -57.6 NC_001900.1 + 13442 0.7 0.324369
Target:  5'- aUCgAGGCCGACgcggUGCugCGucuggugcguaACCCGGAg -3'
miRNA:   3'- -AGgUCCGGCUG----ACGugGU-----------UGGGCUUa -5'
7271 5' -57.6 NC_001900.1 + 38440 0.7 0.316483
Target:  5'- aUCCuGGCUGACgGCgACgAGCCCGGu- -3'
miRNA:   3'- -AGGuCCGGCUGaCG-UGgUUGGGCUua -5'
7271 5' -57.6 NC_001900.1 + 6368 0.71 0.279228
Target:  5'- aCCAGGuuGAgaGCGCCAGCgaCGAu- -3'
miRNA:   3'- aGGUCCggCUgaCGUGGUUGg-GCUua -5'
7271 5' -57.6 NC_001900.1 + 4903 0.71 0.252004
Target:  5'- aCCAGGCUGccguCUGCagaACCAgACCCGAGc -3'
miRNA:   3'- aGGUCCGGCu---GACG---UGGU-UGGGCUUa -5'
7271 5' -57.6 NC_001900.1 + 41615 0.72 0.239231
Target:  5'- gUCGGGCuCGAUggaGCACCGACCCuGGAUc -3'
miRNA:   3'- aGGUCCG-GCUGa--CGUGGUUGGG-CUUA- -5'
7271 5' -57.6 NC_001900.1 + 23398 0.72 0.221091
Target:  5'- aUCAGGCCGAgUGgACCGACCagGGAg -3'
miRNA:   3'- aGGUCCGGCUgACgUGGUUGGg-CUUa -5'
7271 5' -57.6 NC_001900.1 + 42774 0.72 0.221091
Target:  5'- aCCAGGUCGuGCcagGCGuCCAGCCCGAc- -3'
miRNA:   3'- aGGUCCGGC-UGa--CGU-GGUUGGGCUua -5'
7271 5' -57.6 NC_001900.1 + 22861 0.72 0.215309
Target:  5'- uUCCAGGUguuccuccagCGGCUGCugACCgAACCCGGAg -3'
miRNA:   3'- -AGGUCCG----------GCUGACG--UGG-UUGGGCUUa -5'
7271 5' -57.6 NC_001900.1 + 16009 0.73 0.182795
Target:  5'- aUCCGGGCCGAgCUGUacgcgaccguacuGCgGACCUGGAUg -3'
miRNA:   3'- -AGGUCCGGCU-GACG-------------UGgUUGGGCUUA- -5'
7271 5' -57.6 NC_001900.1 + 29431 0.75 0.135406
Target:  5'- gUCCGGuGCUGAUcgGCACCGAcCCCGAAg -3'
miRNA:   3'- -AGGUC-CGGCUGa-CGUGGUU-GGGCUUa -5'
7271 5' -57.6 NC_001900.1 + 34486 0.78 0.091118
Target:  5'- aCgAGGUCGuCUGCACCAACCCGuGUg -3'
miRNA:   3'- aGgUCCGGCuGACGUGGUUGGGCuUA- -5'
7271 5' -57.6 NC_001900.1 + 44485 0.79 0.078926
Target:  5'- cUCCAGGCCGACggUGUACCGgcGCUCGAu- -3'
miRNA:   3'- -AGGUCCGGCUG--ACGUGGU--UGGGCUua -5'
7271 5' -57.6 NC_001900.1 + 5322 1.06 0.000781
Target:  5'- aUCCAGGCCGACUGCACCAACCCGAAUc -3'
miRNA:   3'- -AGGUCCGGCUGACGUGGUUGGGCUUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.