Results 1 - 17 of 17 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
7272 | 3' | -55.5 | NC_001900.1 | + | 2641 | 0.66 | 0.698127 |
Target: 5'- cGCCGUCGGGCuacGCCC-----UCAGCGg -3' miRNA: 3'- cUGGCAGCUCG---CGGGucuguAGUUGC- -5' |
|||||||
7272 | 3' | -55.5 | NC_001900.1 | + | 29408 | 0.66 | 0.698127 |
Target: 5'- cGAUCucgCGAGCGCCCcaguuGGCcuucUCAGCGg -3' miRNA: 3'- -CUGGca-GCUCGCGGGu----CUGu---AGUUGC- -5' |
|||||||
7272 | 3' | -55.5 | NC_001900.1 | + | 18667 | 0.66 | 0.698127 |
Target: 5'- cGGCCGUgCG-GCGCUgCAGGCG-CAGCu -3' miRNA: 3'- -CUGGCA-GCuCGCGG-GUCUGUaGUUGc -5' |
|||||||
7272 | 3' | -55.5 | NC_001900.1 | + | 3030 | 0.66 | 0.698127 |
Target: 5'- cGACCGgcgaCGGGUccGCCUGGAgAUCgAGCGg -3' miRNA: 3'- -CUGGCa---GCUCG--CGGGUCUgUAG-UUGC- -5' |
|||||||
7272 | 3' | -55.5 | NC_001900.1 | + | 33588 | 0.66 | 0.698127 |
Target: 5'- aGAUCGUgGAGCccuugaucaGCCCAGAgAaccucugcagaUCGGCGg -3' miRNA: 3'- -CUGGCAgCUCG---------CGGGUCUgU-----------AGUUGC- -5' |
|||||||
7272 | 3' | -55.5 | NC_001900.1 | + | 36041 | 0.66 | 0.676304 |
Target: 5'- uGCUgGUCGAGCacCCCGGGCugcgCGACGa -3' miRNA: 3'- cUGG-CAGCUCGc-GGGUCUGua--GUUGC- -5' |
|||||||
7272 | 3' | -55.5 | NC_001900.1 | + | 5605 | 0.66 | 0.665324 |
Target: 5'- aGCUGUCGGagcuGCGCUgggCAGGCAUCggUGc -3' miRNA: 3'- cUGGCAGCU----CGCGG---GUCUGUAGuuGC- -5' |
|||||||
7272 | 3' | -55.5 | NC_001900.1 | + | 2536 | 0.66 | 0.665324 |
Target: 5'- --aCGUCGguGGCaGCCCGGACG-CAGCc -3' miRNA: 3'- cugGCAGC--UCG-CGGGUCUGUaGUUGc -5' |
|||||||
7272 | 3' | -55.5 | NC_001900.1 | + | 30810 | 0.67 | 0.621195 |
Target: 5'- cACCgGUCGAGCaCCUGGAgGUCGuACGa -3' miRNA: 3'- cUGG-CAGCUCGcGGGUCUgUAGU-UGC- -5' |
|||||||
7272 | 3' | -55.5 | NC_001900.1 | + | 27151 | 0.67 | 0.617884 |
Target: 5'- cGACCGacaucagCGAcgagaggaucagcaGCGCCCAGGCGUacCAACc -3' miRNA: 3'- -CUGGCa------GCU--------------CGCGGGUCUGUA--GUUGc -5' |
|||||||
7272 | 3' | -55.5 | NC_001900.1 | + | 13632 | 0.68 | 0.577215 |
Target: 5'- uGCCGacaUGAGCGCCagcGACGuUCAGCGg -3' miRNA: 3'- cUGGCa--GCUCGCGGgu-CUGU-AGUUGC- -5' |
|||||||
7272 | 3' | -55.5 | NC_001900.1 | + | 3616 | 0.68 | 0.555463 |
Target: 5'- aGGCCGUuaccggcccCGAGCGCC---GCGUCGAUGg -3' miRNA: 3'- -CUGGCA---------GCUCGCGGgucUGUAGUUGC- -5' |
|||||||
7272 | 3' | -55.5 | NC_001900.1 | + | 43040 | 0.68 | 0.544676 |
Target: 5'- aGCCGggGAGCGuCCCGGuACAUCGGg- -3' miRNA: 3'- cUGGCagCUCGC-GGGUC-UGUAGUUgc -5' |
|||||||
7272 | 3' | -55.5 | NC_001900.1 | + | 21160 | 0.68 | 0.533957 |
Target: 5'- uGGCCGguggacaGucCGCuCCGGGCAUCAACGa -3' miRNA: 3'- -CUGGCag-----CucGCG-GGUCUGUAGUUGC- -5' |
|||||||
7272 | 3' | -55.5 | NC_001900.1 | + | 8237 | 0.7 | 0.422332 |
Target: 5'- cGACCGUCucGGUGCCgGGAUGUgGGCGu -3' miRNA: 3'- -CUGGCAGc-UCGCGGgUCUGUAgUUGC- -5' |
|||||||
7272 | 3' | -55.5 | NC_001900.1 | + | 38461 | 0.72 | 0.32593 |
Target: 5'- cGACCGUCGGGauCCCGcACAgcUCAGCGg -3' miRNA: 3'- -CUGGCAGCUCgcGGGUcUGU--AGUUGC- -5' |
|||||||
7272 | 3' | -55.5 | NC_001900.1 | + | 5650 | 1.08 | 0.001097 |
Target: 5'- gGACCGUCGAGCGCCCAGACAUCAACGc -3' miRNA: 3'- -CUGGCAGCUCGCGGGUCUGUAGUUGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home