miRNA display CGI


Results 21 - 40 of 43 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7273 3' -62.3 NC_001900.1 + 23302 0.66 0.331366
Target:  5'- aGGCGAgCCUGCA--GCUCGGcgAUGGCa -3'
miRNA:   3'- gCCGCU-GGGCGUcuUGGGCC--UGCCGa -5'
7273 3' -62.3 NC_001900.1 + 23521 0.67 0.323734
Target:  5'- cCGGUGAggCUGCAGGccucuuCCgGGGCGGCUc -3'
miRNA:   3'- -GCCGCUg-GGCGUCUu-----GGgCCUGCCGA- -5'
7273 3' -62.3 NC_001900.1 + 23973 0.68 0.27399
Target:  5'- cCGGCGucgucggcauCCUGCAGAuCCCcaacGGCGGCa -3'
miRNA:   3'- -GCCGCu---------GGGCGUCUuGGGc---CUGCCGa -5'
7273 3' -62.3 NC_001900.1 + 24026 0.69 0.23056
Target:  5'- gCGGCcgaaGCCCGCGccaaccucGGugCCGaGGCGGCUa -3'
miRNA:   3'- -GCCGc---UGGGCGU--------CUugGGC-CUGCCGA- -5'
7273 3' -62.3 NC_001900.1 + 24789 0.66 0.363206
Target:  5'- gGGCGACaCCaCAGccaccuuCUCGGGCGGUg -3'
miRNA:   3'- gCCGCUG-GGcGUCuu-----GGGCCUGCCGa -5'
7273 3' -62.3 NC_001900.1 + 28100 0.68 0.260949
Target:  5'- uGGCGGCuCCGCAcccGGuuacaccgGCCCGaACGGCg -3'
miRNA:   3'- gCCGCUG-GGCGU---CU--------UGGGCcUGCCGa -5'
7273 3' -62.3 NC_001900.1 + 29655 0.67 0.323734
Target:  5'- cCGGCGGCugCCGguGGACCgcucuCGGAcguacuCGGCg -3'
miRNA:   3'- -GCCGCUG--GGCguCUUGG-----GCCU------GCCGa -5'
7273 3' -62.3 NC_001900.1 + 30080 0.66 0.331366
Target:  5'- cCGGCGcagacgcuGCCCGCGuccgaCUGGACGGUg -3'
miRNA:   3'- -GCCGC--------UGGGCGUcuug-GGCCUGCCGa -5'
7273 3' -62.3 NC_001900.1 + 31320 0.66 0.371491
Target:  5'- uCGGUGccGCCCGUgua--CCGGACGGUg -3'
miRNA:   3'- -GCCGC--UGGGCGucuugGGCCUGCCGa -5'
7273 3' -62.3 NC_001900.1 + 31467 0.66 0.371491
Target:  5'- uCGGCcAUCagugGUAGAuccCCCGGACGGUg -3'
miRNA:   3'- -GCCGcUGGg---CGUCUu--GGGCCUGCCGa -5'
7273 3' -62.3 NC_001900.1 + 31824 0.69 0.224853
Target:  5'- uGGCGACCCcgAGGuCUCGGGCGaGCUu -3'
miRNA:   3'- gCCGCUGGGcgUCUuGGGCCUGC-CGA- -5'
7273 3' -62.3 NC_001900.1 + 33156 0.66 0.347025
Target:  5'- uGGCGGCagcaaGCcGAACuCCGGugGCGGCg -3'
miRNA:   3'- gCCGCUGgg---CGuCUUG-GGCC--UGCCGa -5'
7273 3' -62.3 NC_001900.1 + 34537 0.7 0.203212
Target:  5'- aCGGCGAgCCGgGGAugUgGGACaGCa -3'
miRNA:   3'- -GCCGCUgGGCgUCUugGgCCUGcCGa -5'
7273 3' -62.3 NC_001900.1 + 34904 0.7 0.193084
Target:  5'- -uGCGACCCGCc--GCCCGGACG-Cg -3'
miRNA:   3'- gcCGCUGGGCGucuUGGGCCUGCcGa -5'
7273 3' -62.3 NC_001900.1 + 34980 0.66 0.355051
Target:  5'- -cGUGuCCCGCG---UCCGGGCGGCg -3'
miRNA:   3'- gcCGCuGGGCGUcuuGGGCCUGCCGa -5'
7273 3' -62.3 NC_001900.1 + 35942 0.7 0.180581
Target:  5'- uCGGCGGCUCGUAGAgguacucgucgcgcaGCCCGGGguGCUc -3'
miRNA:   3'- -GCCGCUGGGCGUCU---------------UGGGCCUgcCGA- -5'
7273 3' -62.3 NC_001900.1 + 36514 0.68 0.260949
Target:  5'- uCGGCGAgCUGCG--GCCCGGugaGGCc -3'
miRNA:   3'- -GCCGCUgGGCGUcuUGGGCCug-CCGa -5'
7273 3' -62.3 NC_001900.1 + 39117 0.67 0.316234
Target:  5'- uCGGCGcuaugcgcucCCCGau-GACCUGGACGGCc -3'
miRNA:   3'- -GCCGCu---------GGGCgucUUGGGCCUGCCGa -5'
7273 3' -62.3 NC_001900.1 + 39476 0.68 0.283426
Target:  5'- aGGCuGCUCGCAGcucaacgagcugggaGACCCGGAUccuGGCc -3'
miRNA:   3'- gCCGcUGGGCGUC---------------UUGGGCCUG---CCGa -5'
7273 3' -62.3 NC_001900.1 + 41220 0.72 0.143829
Target:  5'- aGGCGAucgaCCCGgAGAGCCCGGAUccgaagaagccucgGGUg -3'
miRNA:   3'- gCCGCU----GGGCgUCUUGGGCCUG--------------CCGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.