miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7273 3' -62.3 NC_001900.1 + 44675 0.7 0.198091
Target:  5'- uCGGCGACagCGUGGAACgCGGuccccuGCGGCa -3'
miRNA:   3'- -GCCGCUGg-GCGUCUUGgGCC------UGCCGa -5'
7273 3' -62.3 NC_001900.1 + 39117 0.67 0.316234
Target:  5'- uCGGCGcuaugcgcucCCCGau-GACCUGGACGGCc -3'
miRNA:   3'- -GCCGCu---------GGGCgucUUGGGCCUGCCGa -5'
7273 3' -62.3 NC_001900.1 + 23521 0.67 0.323734
Target:  5'- cCGGUGAggCUGCAGGccucuuCCgGGGCGGCUc -3'
miRNA:   3'- -GCCGCUg-GGCGUCUu-----GGgCCUGCCGA- -5'
7273 3' -62.3 NC_001900.1 + 31467 0.66 0.371491
Target:  5'- uCGGCcAUCagugGUAGAuccCCCGGACGGUg -3'
miRNA:   3'- -GCCGcUGGg---CGUCUu--GGGCCUGCCGa -5'
7273 3' -62.3 NC_001900.1 + 24026 0.69 0.23056
Target:  5'- gCGGCcgaaGCCCGCGccaaccucGGugCCGaGGCGGCUa -3'
miRNA:   3'- -GCCGc---UGGGCGU--------CUugGGC-CUGCCGA- -5'
7273 3' -62.3 NC_001900.1 + 13446 0.68 0.263516
Target:  5'- aGGcCGACgCGguGcugcgucuggugcguAACCCGGAgGGCUa -3'
miRNA:   3'- gCC-GCUGgGCguC---------------UUGGGCCUgCCGA- -5'
7273 3' -62.3 NC_001900.1 + 23973 0.68 0.27399
Target:  5'- cCGGCGucgucggcauCCUGCAGAuCCCcaacGGCGGCa -3'
miRNA:   3'- -GCCGCu---------GGGCGUCUuGGGc---CUGCCGa -5'
7273 3' -62.3 NC_001900.1 + 5899 1.07 0.000298
Target:  5'- aCGGCGACCCGCAGAACCCGGACGGCUc -3'
miRNA:   3'- -GCCGCUGGGCGUCUUGGGCCUGCCGA- -5'
7273 3' -62.3 NC_001900.1 + 35942 0.7 0.180581
Target:  5'- uCGGCGGCUCGUAGAgguacucgucgcgcaGCCCGGGguGCUc -3'
miRNA:   3'- -GCCGCUGGGCGUCU---------------UGGGCCUgcCGA- -5'
7273 3' -62.3 NC_001900.1 + 11557 0.67 0.308865
Target:  5'- cCGGCGACCCGac---CCCGGugGuCa -3'
miRNA:   3'- -GCCGCUGGGCgucuuGGGCCugCcGa -5'
7273 3' -62.3 NC_001900.1 + 12877 0.67 0.294522
Target:  5'- aGGCGACCCu--GAACCUGGGCa--- -3'
miRNA:   3'- gCCGCUGGGcguCUUGGGCCUGccga -5'
7273 3' -62.3 NC_001900.1 + 112 0.67 0.294522
Target:  5'- -cGCGACCCaCGGGGaguuauaccCCCGGAauCGGCUa -3'
miRNA:   3'- gcCGCUGGGcGUCUU---------GGGCCU--GCCGA- -5'
7273 3' -62.3 NC_001900.1 + 9789 0.69 0.207918
Target:  5'- cCGGUGGuCCCGCuuccgaaccGGACCCGGcucucggaccuguACGGCa -3'
miRNA:   3'- -GCCGCU-GGGCGu--------CUUGGGCC-------------UGCCGa -5'
7273 3' -62.3 NC_001900.1 + 9904 0.67 0.308865
Target:  5'- aGGCGA-CUGCGGAGCUgaUGGGCGuGCc -3'
miRNA:   3'- gCCGCUgGGCGUCUUGG--GCCUGC-CGa -5'
7273 3' -62.3 NC_001900.1 + 3356 0.69 0.219265
Target:  5'- gGGCGACCUGUuccucgaacuGGAGaCCGG-CGGCg -3'
miRNA:   3'- gCCGCUGGGCG----------UCUUgGGCCuGCCGa -5'
7273 3' -62.3 NC_001900.1 + 16026 0.68 0.280704
Target:  5'- -cGCGACCguacUGCGG-ACCUGGAUGGUg -3'
miRNA:   3'- gcCGCUGG----GCGUCuUGGGCCUGCCGa -5'
7273 3' -62.3 NC_001900.1 + 1249 0.67 0.308865
Target:  5'- gCGGCGGCa-GCGGAGCU--GGCGGCg -3'
miRNA:   3'- -GCCGCUGggCGUCUUGGgcCUGCCGa -5'
7273 3' -62.3 NC_001900.1 + 1804 0.67 0.323734
Target:  5'- uCGGCGACUCGCuGAugUCGagcGACaGCg -3'
miRNA:   3'- -GCCGCUGGGCGuCUugGGC---CUGcCGa -5'
7273 3' -62.3 NC_001900.1 + 31824 0.69 0.224853
Target:  5'- uGGCGACCCcgAGGuCUCGGGCGaGCUu -3'
miRNA:   3'- gCCGCUGGGcgUCUuGGGCCUGC-CGA- -5'
7273 3' -62.3 NC_001900.1 + 43601 0.68 0.272001
Target:  5'- gCGGUGcAUCCGCAGGACCgccgccgucucaugCGGcgcguACGGCg -3'
miRNA:   3'- -GCCGC-UGGGCGUCUUGG--------------GCC-----UGCCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.