miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7273 5' -55 NC_001900.1 + 41258 0.66 0.688147
Target:  5'- cGGAGUggUCaUCUGGguGUUCCuuucgGUGGc -3'
miRNA:   3'- -CCUCGuuGG-AGACCguCGAGG-----UACUc -5'
7273 5' -55 NC_001900.1 + 32448 0.66 0.688147
Target:  5'- gGGGGC-ACa--UGGauuccCAGCUCCGUGGGa -3'
miRNA:   3'- -CCUCGuUGgagACC-----GUCGAGGUACUC- -5'
7273 5' -55 NC_001900.1 + 10855 0.66 0.677031
Target:  5'- cGGAGCGACCUCcagUGGgAGUggUUCGUcAGg -3'
miRNA:   3'- -CCUCGUUGGAG---ACCgUCG--AGGUAcUC- -5'
7273 5' -55 NC_001900.1 + 13923 0.66 0.677031
Target:  5'- cGAGC-ACCggCUGGUaccgGGCUCCGguaucGAGg -3'
miRNA:   3'- cCUCGuUGGa-GACCG----UCGAGGUa----CUC- -5'
7273 5' -55 NC_001900.1 + 39419 0.66 0.643464
Target:  5'- cGAGCAGCCUUgaacucccggUGGUgcguGGCgcaCCGUGGGc -3'
miRNA:   3'- cCUCGUUGGAG----------ACCG----UCGa--GGUACUC- -5'
7273 5' -55 NC_001900.1 + 47687 0.67 0.609798
Target:  5'- aGGGCAGCCUCacgcucuGCAGCgaUCUcgGAGg -3'
miRNA:   3'- cCUCGUUGGAGac-----CGUCG--AGGuaCUC- -5'
7273 5' -55 NC_001900.1 + 24639 0.68 0.554211
Target:  5'- -aGGCGGCUUC-GGCGGUUCC-UGGGu -3'
miRNA:   3'- ccUCGUUGGAGaCCGUCGAGGuACUC- -5'
7273 5' -55 NC_001900.1 + 43563 0.71 0.400199
Target:  5'- cGGAGCAggcggcgcACCgagCUGGcCGGCcgaUCCAUGAc -3'
miRNA:   3'- -CCUCGU--------UGGa--GACC-GUCG---AGGUACUc -5'
7273 5' -55 NC_001900.1 + 11703 0.72 0.346642
Target:  5'- -cAGCGGCCUcCUGGCgaAGCUCCuUGAc -3'
miRNA:   3'- ccUCGUUGGA-GACCG--UCGAGGuACUc -5'
7273 5' -55 NC_001900.1 + 20908 0.72 0.346641
Target:  5'- uGGGGCAccgagaccGCCUUcGGCGGCUCC-UGGc -3'
miRNA:   3'- -CCUCGU--------UGGAGaCCGUCGAGGuACUc -5'
7273 5' -55 NC_001900.1 + 32225 0.73 0.2909
Target:  5'- aGGGGaauuGCUUC-GGCAGCUCCggGAGa -3'
miRNA:   3'- -CCUCgu--UGGAGaCCGUCGAGGuaCUC- -5'
7273 5' -55 NC_001900.1 + 35812 0.74 0.26925
Target:  5'- aGGAGCAucgGCUUCUGGUgugggaacAGCUCCggGAa -3'
miRNA:   3'- -CCUCGU---UGGAGACCG--------UCGAGGuaCUc -5'
7273 5' -55 NC_001900.1 + 5934 1.1 0.000639
Target:  5'- cGGAGCAACCUCUGGCAGCUCCAUGAGc -3'
miRNA:   3'- -CCUCGUUGGAGACCGUCGAGGUACUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.