miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7274 3' -55.6 NC_001900.1 + 25410 0.66 0.690726
Target:  5'- uUCAUCGcCAUGCGC--GGAGuCGUGUg- -3'
miRNA:   3'- -AGUAGC-GUGCGCGagCCUU-GCACGac -5'
7274 3' -55.6 NC_001900.1 + 16904 0.66 0.690726
Target:  5'- cCAUCGC-CGCGCcgcuugUCGGcuUGgugGCUGg -3'
miRNA:   3'- aGUAGCGuGCGCG------AGCCuuGCa--CGAC- -5'
7274 3' -55.6 NC_001900.1 + 1468 0.66 0.668773
Target:  5'- cUCuUCGCuAUGCGCUUGGcauccGACGgugagUGCUGg -3'
miRNA:   3'- -AGuAGCG-UGCGCGAGCC-----UUGC-----ACGAC- -5'
7274 3' -55.6 NC_001900.1 + 30934 0.66 0.657739
Target:  5'- ---gUGCAUgagGCGCUCG--ACGUGCUGa -3'
miRNA:   3'- aguaGCGUG---CGCGAGCcuUGCACGAC- -5'
7274 3' -55.6 NC_001900.1 + 13949 0.67 0.595795
Target:  5'- -gAUCGCACGCuuccaggucGCcaacaguccgguacgUCGGcacGACGUGCUGa -3'
miRNA:   3'- agUAGCGUGCG---------CG---------------AGCC---UUGCACGAC- -5'
7274 3' -55.6 NC_001900.1 + 21435 0.67 0.569449
Target:  5'- cCAUCGCACGCaGCgUCGGGACu----- -3'
miRNA:   3'- aGUAGCGUGCG-CG-AGCCUUGcacgac -5'
7274 3' -55.6 NC_001900.1 + 48985 0.67 0.569449
Target:  5'- cUCGagGCACGCGUgcCGuGAGCGUuuGCUGu -3'
miRNA:   3'- -AGUagCGUGCGCGa-GC-CUUGCA--CGAC- -5'
7274 3' -55.6 NC_001900.1 + 22158 0.68 0.558553
Target:  5'- gUCGUgcCGCugGC-CUCGGAAgGccgGCUGg -3'
miRNA:   3'- -AGUA--GCGugCGcGAGCCUUgCa--CGAC- -5'
7274 3' -55.6 NC_001900.1 + 46104 0.68 0.515639
Target:  5'- cCAUgCGC-CGCGCUCGG--CG-GCUGg -3'
miRNA:   3'- aGUA-GCGuGCGCGAGCCuuGCaCGAC- -5'
7274 3' -55.6 NC_001900.1 + 5152 0.69 0.484346
Target:  5'- aCggCGCACGCGCcUGGAACGacccGCUc -3'
miRNA:   3'- aGuaGCGUGCGCGaGCCUUGCa---CGAc -5'
7274 3' -55.6 NC_001900.1 + 17712 0.69 0.47107
Target:  5'- ---aCGCugGCGUcagcgccgugaugaUCGGAGCGaGCUGa -3'
miRNA:   3'- aguaGCGugCGCG--------------AGCCUUGCaCGAC- -5'
7274 3' -55.6 NC_001900.1 + 42068 0.7 0.4247
Target:  5'- gUCGUUGUACGgGC-CGGuGACGUGgUGg -3'
miRNA:   3'- -AGUAGCGUGCgCGaGCC-UUGCACgAC- -5'
7274 3' -55.6 NC_001900.1 + 3535 0.71 0.368785
Target:  5'- cCAUCGaCGCgGCGCUCGGGGCcgguaacggccugGUGCa- -3'
miRNA:   3'- aGUAGC-GUG-CGCGAGCCUUG-------------CACGac -5'
7274 3' -55.6 NC_001900.1 + 9054 0.73 0.268038
Target:  5'- -uGUCGuUugGCGUUCaGGACGUGCUGc -3'
miRNA:   3'- agUAGC-GugCGCGAGcCUUGCACGAC- -5'
7274 3' -55.6 NC_001900.1 + 6089 1.1 0.000734
Target:  5'- uUCAUCGCACGCGCUCGGAACGUGCUGg -3'
miRNA:   3'- -AGUAGCGUGCGCGAGCCUUGCACGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.