Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7274 | 5' | -55.4 | NC_001900.1 | + | 11092 | 0.7 | 0.46696 |
Target: 5'- uGCugauuucCCGugGCCCCGAGUACCUuucggcggauaGCGGGg -3' miRNA: 3'- cCGuc-----GGU--UGGGGCUCAUGGA-----------UGUCC- -5' |
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7274 | 5' | -55.4 | NC_001900.1 | + | 24038 | 0.71 | 0.400506 |
Target: 5'- cGC-GCCAACCUCG-GUGCCgaggcggcuaucccgGCAGGg -3' miRNA: 3'- cCGuCGGUUGGGGCuCAUGGa--------------UGUCC- -5' |
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7274 | 5' | -55.4 | NC_001900.1 | + | 16103 | 0.72 | 0.330635 |
Target: 5'- cGGCGGggcgauucucuCCGACUuguCCGAGUACC-ACGGGg -3' miRNA: 3'- -CCGUC-----------GGUUGG---GGCUCAUGGaUGUCC- -5' |
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7274 | 5' | -55.4 | NC_001900.1 | + | 3334 | 0.77 | 0.177655 |
Target: 5'- aGCAGCCcACCCCcug-GCCUGCGGGc -3' miRNA: 3'- cCGUCGGuUGGGGcucaUGGAUGUCC- -5' |
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7274 | 5' | -55.4 | NC_001900.1 | + | 6126 | 1.12 | 0.000568 |
Target: 5'- aGGCAGCCAACCCCGAGUACCUACAGGc -3' miRNA: 3'- -CCGUCGGUUGGGGCUCAUGGAUGUCC- -5' |
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7274 | 5' | -55.4 | NC_001900.1 | + | 25150 | 0.69 | 0.518488 |
Target: 5'- cGCAGCCAGCCUCGcAGaGgCU-CGGGc -3' miRNA: 3'- cCGUCGGUUGGGGC-UCaUgGAuGUCC- -5' |
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7274 | 5' | -55.4 | NC_001900.1 | + | 1849 | 0.66 | 0.681912 |
Target: 5'- cGGguGaCGGCCUCG---GCCUGCGGGc -3' miRNA: 3'- -CCguCgGUUGGGGCucaUGGAUGUCC- -5' |
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7274 | 5' | -55.4 | NC_001900.1 | + | 8799 | 0.66 | 0.670975 |
Target: 5'- aGGCAuacGUCGACuCCUGGGgccggACCUACAa- -3' miRNA: 3'- -CCGU---CGGUUG-GGGCUCa----UGGAUGUcc -5' |
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7274 | 5' | -55.4 | NC_001900.1 | + | 27356 | 0.67 | 0.61485 |
Target: 5'- gGGCcagcacgaAGCCAGCCCCuccagagcccagaGGGUGCUacCGGGu -3' miRNA: 3'- -CCG--------UCGGUUGGGG-------------CUCAUGGauGUCC- -5' |
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7274 | 5' | -55.4 | NC_001900.1 | + | 9877 | 0.68 | 0.593972 |
Target: 5'- cGGCGGCUcgAAUCCUGA-UGCUgaUGCAGGc -3' miRNA: 3'- -CCGUCGG--UUGGGGCUcAUGG--AUGUCC- -5' |
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7274 | 5' | -55.4 | NC_001900.1 | + | 39736 | 0.68 | 0.550467 |
Target: 5'- aGCcGCCAGCUCCGGGUcaGCCaGCAu- -3' miRNA: 3'- cCGuCGGUUGGGGCUCA--UGGaUGUcc -5' |
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7274 | 5' | -55.4 | NC_001900.1 | + | 24937 | 0.7 | 0.477062 |
Target: 5'- aGGCAGCUcACCCCagugguaucGGGUacgcACCUGguGGc -3' miRNA: 3'- -CCGUCGGuUGGGG---------CUCA----UGGAUguCC- -5' |
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7274 | 5' | -55.4 | NC_001900.1 | + | 31249 | 0.67 | 0.649002 |
Target: 5'- gGGCAGCCAGCagguuGUGCUgcCAGGu -3' miRNA: 3'- -CCGUCGGUUGgggcuCAUGGauGUCC- -5' |
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7274 | 5' | -55.4 | NC_001900.1 | + | 34125 | 0.69 | 0.487271 |
Target: 5'- aGCGGUgAACCgcuugucuCCGGGUGCCUGCGa- -3' miRNA: 3'- cCGUCGgUUGG--------GGCUCAUGGAUGUcc -5' |
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7274 | 5' | -55.4 | NC_001900.1 | + | 23314 | 0.68 | 0.556939 |
Target: 5'- cGGCGGUCGGCCCCGGcuggGCCgaguucuauaccgGCGGcGg -3' miRNA: 3'- -CCGUCGGUUGGGGCUca--UGGa------------UGUC-C- -5' |
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7274 | 5' | -55.4 | NC_001900.1 | + | 33796 | 0.66 | 0.660001 |
Target: 5'- uGCGGCCAcgGCCUCGAccaagGUGuCCUucguCGGGa -3' miRNA: 3'- cCGUCGGU--UGGGGCU-----CAU-GGAu---GUCC- -5' |
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7274 | 5' | -55.4 | NC_001900.1 | + | 16755 | 0.66 | 0.692801 |
Target: 5'- gGGCGGCU--UCCUGAGccGCCUGCucGGc -3' miRNA: 3'- -CCGUCGGuuGGGGCUCa-UGGAUGu-CC- -5' |
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7274 | 5' | -55.4 | NC_001900.1 | + | 23510 | 0.69 | 0.518488 |
Target: 5'- cGGCA-CCAuCCCCG-GUGaggCUGCAGGc -3' miRNA: 3'- -CCGUcGGUuGGGGCuCAUg--GAUGUCC- -5' |
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7274 | 5' | -55.4 | NC_001900.1 | + | 43118 | 0.7 | 0.465956 |
Target: 5'- aGCAGCCAGCCCagagcauCGAGcUGCgCU-CGGGu -3' miRNA: 3'- cCGUCGGUUGGG-------GCUC-AUG-GAuGUCC- -5' |
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7274 | 5' | -55.4 | NC_001900.1 | + | 17784 | 0.7 | 0.437341 |
Target: 5'- cGGuCAGCacaGGCCCC-AGaGCCUGCAGa -3' miRNA: 3'- -CC-GUCGg--UUGGGGcUCaUGGAUGUCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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