miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7275 3' -58.1 NC_001900.1 + 147 0.66 0.502415
Target:  5'- uGGUgGCUCaCAgcGCCUGGgcgaGGCGCucuAGCg -3'
miRNA:   3'- -CCG-CGAGaGU--UGGACCag--CCGCG---UCG- -5'
7275 3' -58.1 NC_001900.1 + 1458 0.67 0.459183
Target:  5'- uGCGCUUggcauccgacggugaGugCUGGUCGcGgGCGGCg -3'
miRNA:   3'- cCGCGAGag-------------UugGACCAGC-CgCGUCG- -5'
7275 3' -58.1 NC_001900.1 + 1647 0.66 0.523124
Target:  5'- cGCGCUCUguACgaGGa-GGCGUGGUu -3'
miRNA:   3'- cCGCGAGAguUGgaCCagCCGCGUCG- -5'
7275 3' -58.1 NC_001900.1 + 3544 0.68 0.405099
Target:  5'- cGGCGCUCggGGCC-GGUaaCGGCcuGguGCa -3'
miRNA:   3'- -CCGCGAGagUUGGaCCA--GCCG--CguCG- -5'
7275 3' -58.1 NC_001900.1 + 3765 0.77 0.0999
Target:  5'- cGGCGCUCguUCGAUgaGGUCGGCGUcGUc -3'
miRNA:   3'- -CCGCGAG--AGUUGgaCCAGCCGCGuCG- -5'
7275 3' -58.1 NC_001900.1 + 3842 0.67 0.492195
Target:  5'- cGGC-UUCUcCGGgCUGaUCGGCGCGGUg -3'
miRNA:   3'- -CCGcGAGA-GUUgGACcAGCCGCGUCG- -5'
7275 3' -58.1 NC_001900.1 + 5388 0.7 0.331538
Target:  5'- uGGUGCagUCGGCCUGGaugaGGCcgucacgcacggccgGCAGCa -3'
miRNA:   3'- -CCGCGagAGUUGGACCag--CCG---------------CGUCG- -5'
7275 3' -58.1 NC_001900.1 + 6303 1.12 0.000277
Target:  5'- uGGCGCUCUCAACCUGGUCGGCGCAGCc -3'
miRNA:   3'- -CCGCGAGAGUUGGACCAGCCGCGUCG- -5'
7275 3' -58.1 NC_001900.1 + 6418 0.69 0.364492
Target:  5'- uGCGCUgCUgguugaccuugacagCGGCCgUGGcCGGUGCGGCu -3'
miRNA:   3'- cCGCGA-GA---------------GUUGG-ACCaGCCGCGUCG- -5'
7275 3' -58.1 NC_001900.1 + 8450 0.71 0.269637
Target:  5'- cGGCGCaaguucCUCAACCaGGUCaaCGCGGCc -3'
miRNA:   3'- -CCGCGa-----GAGUUGGaCCAGccGCGUCG- -5'
7275 3' -58.1 NC_001900.1 + 12990 0.7 0.328366
Target:  5'- aGGCGUUCgucgcucugacCAACgUGGUCaGCgGCGGCg -3'
miRNA:   3'- -CCGCGAGa----------GUUGgACCAGcCG-CGUCG- -5'
7275 3' -58.1 NC_001900.1 + 13418 0.7 0.312842
Target:  5'- uGCGCUC--GACCUGuucgaGUCGGCGCucgaucAGCg -3'
miRNA:   3'- cCGCGAGagUUGGAC-----CAGCCGCG------UCG- -5'
7275 3' -58.1 NC_001900.1 + 15548 0.66 0.512727
Target:  5'- cGGC-CUCUC-GCCgGG-CGGUGgAGCc -3'
miRNA:   3'- -CCGcGAGAGuUGGaCCaGCCGCgUCG- -5'
7275 3' -58.1 NC_001900.1 + 18039 0.66 0.554771
Target:  5'- cGGUGgUCcagaucgucaUCAACCUGGcugCGGcCGUGGUg -3'
miRNA:   3'- -CCGCgAG----------AGUUGGACCa--GCC-GCGUCG- -5'
7275 3' -58.1 NC_001900.1 + 18133 0.71 0.283481
Target:  5'- uGGCGUcCUggCAGaCUGcGUCGGCGCAGUc -3'
miRNA:   3'- -CCGCGaGA--GUUgGAC-CAGCCGCGUCG- -5'
7275 3' -58.1 NC_001900.1 + 18684 0.69 0.352705
Target:  5'- aGGCGCagCUCGACCaGaUCaaGGCGCAGa -3'
miRNA:   3'- -CCGCGa-GAGUUGGaCcAG--CCGCGUCg -5'
7275 3' -58.1 NC_001900.1 + 18694 0.68 0.423622
Target:  5'- uGCGUucuUCUCGACCUGGauccgcuugCGcuccugcuccaGCGCAGCc -3'
miRNA:   3'- cCGCG---AGAGUUGGACCa--------GC-----------CGCGUCG- -5'
7275 3' -58.1 NC_001900.1 + 18759 0.72 0.224872
Target:  5'- uGCGC-CUUGAUCUGGUCGaGCugcgccuGCAGCg -3'
miRNA:   3'- cCGCGaGAGUUGGACCAGC-CG-------CGUCG- -5'
7275 3' -58.1 NC_001900.1 + 20956 0.68 0.396032
Target:  5'- cGGCGgUCgUCAACCUGGcUGGaGaCGGCc -3'
miRNA:   3'- -CCGCgAG-AGUUGGACCaGCCgC-GUCG- -5'
7275 3' -58.1 NC_001900.1 + 24111 0.67 0.472051
Target:  5'- -cCGC-CUCGgcACCgaGGUUGGCGCGGg -3'
miRNA:   3'- ccGCGaGAGU--UGGa-CCAGCCGCGUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.