Results 21 - 33 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7275 | 3' | -58.1 | NC_001900.1 | + | 3765 | 0.77 | 0.0999 |
Target: 5'- cGGCGCUCguUCGAUgaGGUCGGCGUcGUc -3' miRNA: 3'- -CCGCGAG--AGUUGgaCCAGCCGCGuCG- -5' |
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7275 | 3' | -58.1 | NC_001900.1 | + | 6303 | 1.12 | 0.000277 |
Target: 5'- uGGCGCUCUCAACCUGGUCGGCGCAGCc -3' miRNA: 3'- -CCGCGAGAGUUGGACCAGCCGCGUCG- -5' |
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7275 | 3' | -58.1 | NC_001900.1 | + | 35820 | 0.66 | 0.523124 |
Target: 5'- cGGCGUgUUCAccCCUGGcuaCGGC-CAGCg -3' miRNA: 3'- -CCGCGaGAGUu-GGACCa--GCCGcGUCG- -5' |
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7275 | 3' | -58.1 | NC_001900.1 | + | 18759 | 0.72 | 0.224872 |
Target: 5'- uGCGC-CUUGAUCUGGUCGaGCugcgccuGCAGCg -3' miRNA: 3'- cCGCGaGAGUUGGACCAGC-CG-------CGUCG- -5' |
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7275 | 3' | -58.1 | NC_001900.1 | + | 13418 | 0.7 | 0.312842 |
Target: 5'- uGCGCUC--GACCUGuucgaGUCGGCGCucgaucAGCg -3' miRNA: 3'- cCGCGAGagUUGGAC-----CAGCCGCG------UCG- -5' |
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7275 | 3' | -58.1 | NC_001900.1 | + | 5388 | 0.7 | 0.331538 |
Target: 5'- uGGUGCagUCGGCCUGGaugaGGCcgucacgcacggccgGCAGCa -3' miRNA: 3'- -CCGCGagAGUUGGACCag--CCG---------------CGUCG- -5' |
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7275 | 3' | -58.1 | NC_001900.1 | + | 6418 | 0.69 | 0.364492 |
Target: 5'- uGCGCUgCUgguugaccuugacagCGGCCgUGGcCGGUGCGGCu -3' miRNA: 3'- cCGCGA-GA---------------GUUGG-ACCaGCCGCGUCG- -5' |
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7275 | 3' | -58.1 | NC_001900.1 | + | 33180 | 0.69 | 0.378293 |
Target: 5'- uGGCcgaucaCUCgcCAACCUGGgUGGCgGCAGCa -3' miRNA: 3'- -CCGc-----GAGa-GUUGGACCaGCCG-CGUCG- -5' |
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7275 | 3' | -58.1 | NC_001900.1 | + | 38713 | 0.68 | 0.396032 |
Target: 5'- cGGUGgUCgcccuggCGuaaCUGGUCGGuUGCAGCg -3' miRNA: 3'- -CCGCgAGa------GUug-GACCAGCC-GCGUCG- -5' |
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7275 | 3' | -58.1 | NC_001900.1 | + | 18694 | 0.68 | 0.423622 |
Target: 5'- uGCGUucuUCUCGACCUGGauccgcuugCGcuccugcuccaGCGCAGCc -3' miRNA: 3'- cCGCG---AGAGUUGGACCa--------GC-----------CGCGUCG- -5' |
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7275 | 3' | -58.1 | NC_001900.1 | + | 1458 | 0.67 | 0.459183 |
Target: 5'- uGCGCUUggcauccgacggugaGugCUGGUCGcGgGCGGCg -3' miRNA: 3'- cCGCGAGag-------------UugGACCAGC-CgCGUCG- -5' |
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7275 | 3' | -58.1 | NC_001900.1 | + | 24111 | 0.67 | 0.472051 |
Target: 5'- -cCGC-CUCGgcACCgaGGUUGGCGCGGg -3' miRNA: 3'- ccGCGaGAGU--UGGa-CCAGCCGCGUCg -5' |
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7275 | 3' | -58.1 | NC_001900.1 | + | 147 | 0.66 | 0.502415 |
Target: 5'- uGGUgGCUCaCAgcGCCUGGgcgaGGCGCucuAGCg -3' miRNA: 3'- -CCG-CGAGaGU--UGGACCag--CCGCG---UCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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