miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7275 5' -55.3 NC_001900.1 + 6337 1.1 0.000829
Target:  5'- gCCACGGCCGCUGUCAAGGUCAACCAGc -3'
miRNA:   3'- -GGUGCCGGCGACAGUUCCAGUUGGUC- -5'
7275 5' -55.3 NC_001900.1 + 10691 0.77 0.173591
Target:  5'- gCCugGGCCGCUGcauacugcUCAGGcGUCAGgCGGa -3'
miRNA:   3'- -GGugCCGGCGAC--------AGUUC-CAGUUgGUC- -5'
7275 5' -55.3 NC_001900.1 + 16706 0.76 0.204136
Target:  5'- gCCugGGCCGCguucagGUCGGcGUUGACCGGa -3'
miRNA:   3'- -GGugCCGGCGa-----CAGUUcCAGUUGGUC- -5'
7275 5' -55.3 NC_001900.1 + 23203 0.75 0.221091
Target:  5'- cCCG-GGCUGCgcccGUCAGGGcCGACCAGa -3'
miRNA:   3'- -GGUgCCGGCGa---CAGUUCCaGUUGGUC- -5'
7275 5' -55.3 NC_001900.1 + 863 0.73 0.301147
Target:  5'- gCCACGGUCGCgaucagcucgaUGggCAuccgcuccucgaAGGUCGACCAGg -3'
miRNA:   3'- -GGUGCCGGCG-----------ACa-GU------------UCCAGUUGGUC- -5'
7275 5' -55.3 NC_001900.1 + 32844 0.73 0.308742
Target:  5'- cCCcCGGUgGCUGUCAAGcGUgGAUCAGc -3'
miRNA:   3'- -GGuGCCGgCGACAGUUC-CAgUUGGUC- -5'
7275 5' -55.3 NC_001900.1 + 7959 0.73 0.324369
Target:  5'- uCCGCGGCCGgUGgccgcaUCGAGGcgCAACCu- -3'
miRNA:   3'- -GGUGCCGGCgAC------AGUUCCa-GUUGGuc -5'
7275 5' -55.3 NC_001900.1 + 41163 0.71 0.392641
Target:  5'- uCCACGGCCGC-----AGGUCA-CCGGc -3'
miRNA:   3'- -GGUGCCGGCGacaguUCCAGUuGGUC- -5'
7275 5' -55.3 NC_001900.1 + 32048 0.71 0.392641
Target:  5'- -aGCGGCCGUUGgCGAGGUUGACg-- -3'
miRNA:   3'- ggUGCCGGCGACaGUUCCAGUUGguc -5'
7275 5' -55.3 NC_001900.1 + 40381 0.71 0.420543
Target:  5'- aCCACGGCCGCagcgGcUCAcuGcCGACCGGc -3'
miRNA:   3'- -GGUGCCGGCGa---C-AGUucCaGUUGGUC- -5'
7275 5' -55.3 NC_001900.1 + 19572 0.71 0.420543
Target:  5'- cCCAaGGagaCGCUGcggaUCAAGGUCGGCCGc -3'
miRNA:   3'- -GGUgCCg--GCGAC----AGUUCCAGUUGGUc -5'
7275 5' -55.3 NC_001900.1 + 2260 0.7 0.459542
Target:  5'- -gACGGCCag-GUCGAGGUCAGCg-- -3'
miRNA:   3'- ggUGCCGGcgaCAGUUCCAGUUGguc -5'
7275 5' -55.3 NC_001900.1 + 25494 0.69 0.47669
Target:  5'- cCCACGGCCcggaggucguggauGCggagGUCc-GGUCGACCGa -3'
miRNA:   3'- -GGUGCCGG--------------CGa---CAGuuCCAGUUGGUc -5'
7275 5' -55.3 NC_001900.1 + 11213 0.69 0.490014
Target:  5'- gCCACGGUcuCGgUGUCGAGGUgaaGACCc- -3'
miRNA:   3'- -GGUGCCG--GCgACAGUUCCAg--UUGGuc -5'
7275 5' -55.3 NC_001900.1 + 44310 0.69 0.490014
Target:  5'- cUCGCGGUCGCgaugacuuacggUGUCGAGGcUCcgaaGACCGGc -3'
miRNA:   3'- -GGUGCCGGCG------------ACAGUUCC-AG----UUGGUC- -5'
7275 5' -55.3 NC_001900.1 + 10600 0.68 0.542745
Target:  5'- gCCugGGaCCGUcggGUCGGcGUCGACCAu -3'
miRNA:   3'- -GGugCC-GGCGa--CAGUUcCAGUUGGUc -5'
7275 5' -55.3 NC_001900.1 + 46242 0.68 0.542745
Target:  5'- gUCACgGGUgGCaGUCAAGGUgAACaCAGg -3'
miRNA:   3'- -GGUG-CCGgCGaCAGUUCCAgUUG-GUC- -5'
7275 5' -55.3 NC_001900.1 + 18127 0.68 0.564374
Target:  5'- aCCACGGCCGCaGcCA-GGUUgaugacgaucugGACCAc -3'
miRNA:   3'- -GGUGCCGGCGaCaGUuCCAG------------UUGGUc -5'
7275 5' -55.3 NC_001900.1 + 16528 0.68 0.564374
Target:  5'- gCACGGaUCuCcGUCAAGGUCAGCCc- -3'
miRNA:   3'- gGUGCC-GGcGaCAGUUCCAGUUGGuc -5'
7275 5' -55.3 NC_001900.1 + 15111 0.68 0.586224
Target:  5'- gCCAcCGGCUG--GUCGAGcGUCGGCCAc -3'
miRNA:   3'- -GGU-GCCGGCgaCAGUUC-CAGUUGGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.