miRNA display CGI


Results 21 - 36 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7275 5' -55.3 NC_001900.1 + 21312 0.66 0.704961
Target:  5'- gCACGGCgaGCUGgcuguugaugaaCGAGGUCAGCa-- -3'
miRNA:   3'- gGUGCCGg-CGACa-----------GUUCCAGUUGguc -5'
7275 5' -55.3 NC_001900.1 + 6643 0.66 0.700628
Target:  5'- uCCAgGGCUGCgUGUgcGGGUCGaacggcuggcuguagGCCGGu -3'
miRNA:   3'- -GGUgCCGGCG-ACAguUCCAGU---------------UGGUC- -5'
7275 5' -55.3 NC_001900.1 + 15172 0.66 0.696284
Target:  5'- aCCAgcCGGUgGCUccaGUCcAGGUCGACgGGu -3'
miRNA:   3'- -GGU--GCCGgCGA---CAGuUCCAGUUGgUC- -5'
7275 5' -55.3 NC_001900.1 + 599 0.66 0.685381
Target:  5'- uCCA-GGCCGC----GAGGUUGGCCGGa -3'
miRNA:   3'- -GGUgCCGGCGacagUUCCAGUUGGUC- -5'
7275 5' -55.3 NC_001900.1 + 39023 0.66 0.682099
Target:  5'- cCCuCGGCCGCaGUCAguuacgaccuccaaGGGUuCAACUg- -3'
miRNA:   3'- -GGuGCCGGCGaCAGU--------------UCCA-GUUGGuc -5'
7275 5' -55.3 NC_001900.1 + 37328 0.67 0.652409
Target:  5'- aCgACGGCC-CUGUCGgcguccacgaAGG-CAACCAc -3'
miRNA:   3'- -GgUGCCGGcGACAGU----------UCCaGUUGGUc -5'
7275 5' -55.3 NC_001900.1 + 34162 0.67 0.630316
Target:  5'- -gAUGGCCGCUG---AGGUCGACa-- -3'
miRNA:   3'- ggUGCCGGCGACaguUCCAGUUGguc -5'
7275 5' -55.3 NC_001900.1 + 29003 0.66 0.717889
Target:  5'- -gAUGGCCGaCgacGUaAAGGUCAACUGGg -3'
miRNA:   3'- ggUGCCGGC-Ga--CAgUUCCAGUUGGUC- -5'
7275 5' -55.3 NC_001900.1 + 10600 0.68 0.542745
Target:  5'- gCCugGGaCCGUcggGUCGGcGUCGACCAu -3'
miRNA:   3'- -GGugCC-GGCGa--CAGUUcCAGUUGGUc -5'
7275 5' -55.3 NC_001900.1 + 11213 0.69 0.490014
Target:  5'- gCCACGGUcuCGgUGUCGAGGUgaaGACCc- -3'
miRNA:   3'- -GGUGCCG--GCgACAGUUCCAg--UUGGuc -5'
7275 5' -55.3 NC_001900.1 + 44310 0.69 0.490014
Target:  5'- cUCGCGGUCGCgaugacuuacggUGUCGAGGcUCcgaaGACCGGc -3'
miRNA:   3'- -GGUGCCGGCG------------ACAGUUCC-AG----UUGGUC- -5'
7275 5' -55.3 NC_001900.1 + 40381 0.71 0.420543
Target:  5'- aCCACGGCCGCagcgGcUCAcuGcCGACCGGc -3'
miRNA:   3'- -GGUGCCGGCGa---C-AGUucCaGUUGGUC- -5'
7275 5' -55.3 NC_001900.1 + 41163 0.71 0.392641
Target:  5'- uCCACGGCCGC-----AGGUCA-CCGGc -3'
miRNA:   3'- -GGUGCCGGCGacaguUCCAGUuGGUC- -5'
7275 5' -55.3 NC_001900.1 + 23203 0.75 0.221091
Target:  5'- cCCG-GGCUGCgcccGUCAGGGcCGACCAGa -3'
miRNA:   3'- -GGUgCCGGCGa---CAGUUCCaGUUGGUC- -5'
7275 5' -55.3 NC_001900.1 + 16706 0.76 0.204136
Target:  5'- gCCugGGCCGCguucagGUCGGcGUUGACCGGa -3'
miRNA:   3'- -GGugCCGGCGa-----CAGUUcCAGUUGGUC- -5'
7275 5' -55.3 NC_001900.1 + 10691 0.77 0.173591
Target:  5'- gCCugGGCCGCUGcauacugcUCAGGcGUCAGgCGGa -3'
miRNA:   3'- -GGugCCGGCGAC--------AGUUC-CAGUUgGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.