miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7276 3' -59.2 NC_001900.1 + 2341 0.66 0.479416
Target:  5'- cCAACUGCUcgUCGCUGaccucgaccUGGCCgucaCCCGAg -3'
miRNA:   3'- -GUUGAUGG--GGCGAC---------GCCGGaa--GGGCU- -5'
7276 3' -59.2 NC_001900.1 + 43078 0.66 0.46945
Target:  5'- aUggUUGCCcaggaucagCCGCuUGCGGCCUggCCGGu -3'
miRNA:   3'- -GuuGAUGG---------GGCG-ACGCCGGAagGGCU- -5'
7276 3' -59.2 NC_001900.1 + 9466 0.66 0.459591
Target:  5'- uCGACaucgagGCCCCGCUG-GGCUacaCCGAc -3'
miRNA:   3'- -GUUGa-----UGGGGCGACgCCGGaagGGCU- -5'
7276 3' -59.2 NC_001900.1 + 46995 0.66 0.459591
Target:  5'- gCAGgUAgaCCGCUGCGGUCUgaacCCUGGu -3'
miRNA:   3'- -GUUgAUggGGCGACGCCGGAa---GGGCU- -5'
7276 3' -59.2 NC_001900.1 + 38989 0.66 0.449843
Target:  5'- uCAACUGCCUgGcCUGCGGag--UCCGAg -3'
miRNA:   3'- -GUUGAUGGGgC-GACGCCggaaGGGCU- -5'
7276 3' -59.2 NC_001900.1 + 27907 0.67 0.430696
Target:  5'- -cGCUGggCCGCUGCcguGGCgaUCCCGAg -3'
miRNA:   3'- guUGAUggGGCGACG---CCGgaAGGGCU- -5'
7276 3' -59.2 NC_001900.1 + 43922 0.67 0.402895
Target:  5'- uCGGCccaGCCCuCGC-GCuGGCCgUUCCCGAc -3'
miRNA:   3'- -GUUGa--UGGG-GCGaCG-CCGG-AAGGGCU- -5'
7276 3' -59.2 NC_001900.1 + 19667 0.67 0.402895
Target:  5'- gAGCccGCCCUGCUcGCGGCCgacCuuGAu -3'
miRNA:   3'- gUUGa-UGGGGCGA-CGCCGGaa-GggCU- -5'
7276 3' -59.2 NC_001900.1 + 37348 0.68 0.374524
Target:  5'- ----gGCCCCGCUGCGGgCCguguacgacggCCCu- -3'
miRNA:   3'- guugaUGGGGCGACGCC-GGaa---------GGGcu -5'
7276 3' -59.2 NC_001900.1 + 21286 0.68 0.350834
Target:  5'- uCGAcCUGcCCCCGCUggGCGGUCUgauggaugcggUCCUGAa -3'
miRNA:   3'- -GUU-GAU-GGGGCGA--CGCCGGA-----------AGGGCU- -5'
7276 3' -59.2 NC_001900.1 + 5153 0.68 0.342635
Target:  5'- uCGAC-GCCUCGUUGCGaGaCCUUCaCCGGg -3'
miRNA:   3'- -GUUGaUGGGGCGACGC-C-GGAAG-GGCU- -5'
7276 3' -59.2 NC_001900.1 + 23146 0.69 0.318875
Target:  5'- aGGCUACCUgGCUcGCGGUg-UCCCGc -3'
miRNA:   3'- gUUGAUGGGgCGA-CGCCGgaAGGGCu -5'
7276 3' -59.2 NC_001900.1 + 8036 0.69 0.318875
Target:  5'- -uGCUGCCUCGaUGCGGCCa--CCGGc -3'
miRNA:   3'- guUGAUGGGGCgACGCCGGaagGGCU- -5'
7276 3' -59.2 NC_001900.1 + 33022 0.69 0.296374
Target:  5'- --cCUGCgCCUGCUGCGGag--CCCGAg -3'
miRNA:   3'- guuGAUG-GGGCGACGCCggaaGGGCU- -5'
7276 3' -59.2 NC_001900.1 + 805 0.7 0.26231
Target:  5'- gCGGCUGCgguagacguuccagaCCGCUGCGGCCcguggcaugUCCCGc -3'
miRNA:   3'- -GUUGAUGg--------------GGCGACGCCGGa--------AGGGCu -5'
7276 3' -59.2 NC_001900.1 + 11372 0.7 0.261649
Target:  5'- gAGCUGCagagcgcguuCCUG-UGCGGCCUUUCCGGg -3'
miRNA:   3'- gUUGAUG----------GGGCgACGCCGGAAGGGCU- -5'
7276 3' -59.2 NC_001900.1 + 33321 0.72 0.181897
Target:  5'- gCAGCUACUCCGCgccGUGGCUggUgCCGAa -3'
miRNA:   3'- -GUUGAUGGGGCGa--CGCCGGa-AgGGCU- -5'
7276 3' -59.2 NC_001900.1 + 6718 1.08 0.000424
Target:  5'- gCAACUACCCCGCUGCGGCCUUCCCGAu -3'
miRNA:   3'- -GUUGAUGGGGCGACGCCGGAAGGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.