miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7276 5' -56.1 NC_001900.1 + 31952 0.66 0.676879
Target:  5'- cGUCGAGAGGGaG-GcCGCUGAuGCgGAa -3'
miRNA:   3'- cCAGCUCUUCC-CaCaGCGGCU-CGaCU- -5'
7276 5' -56.1 NC_001900.1 + 6793 0.66 0.665993
Target:  5'- -aUCGGGAaggccgcagcGGGGUaGUUGCCGAuggGCUGc -3'
miRNA:   3'- ccAGCUCU----------UCCCA-CAGCGGCU---CGACu -5'
7276 5' -56.1 NC_001900.1 + 35134 0.68 0.546328
Target:  5'- uGGcCGAGgcGGGUcaGUUGUCGAGCc-- -3'
miRNA:   3'- -CCaGCUCuuCCCA--CAGCGGCUCGacu -5'
7276 5' -56.1 NC_001900.1 + 32814 0.68 0.525122
Target:  5'- aGUUGuGAGGGGgccaGUCGUCGuuGCUGGc -3'
miRNA:   3'- cCAGCuCUUCCCa---CAGCGGCu-CGACU- -5'
7276 5' -56.1 NC_001900.1 + 5520 0.69 0.473609
Target:  5'- cGUCGAccuccGGGGUGUUGCCGAGg--- -3'
miRNA:   3'- cCAGCUcu---UCCCACAGCGGCUCgacu -5'
7276 5' -56.1 NC_001900.1 + 12561 0.7 0.443945
Target:  5'- aGGUCGGGAAcGGGcUGUCgguGCCGuGCa-- -3'
miRNA:   3'- -CCAGCUCUU-CCC-ACAG---CGGCuCGacu -5'
7276 5' -56.1 NC_001900.1 + 26279 0.7 0.42476
Target:  5'- cGGUCGAGGAGuacaccaagaaGUGgaUCGCCGAGCg-- -3'
miRNA:   3'- -CCAGCUCUUCc----------CAC--AGCGGCUCGacu -5'
7276 5' -56.1 NC_001900.1 + 43135 0.71 0.38792
Target:  5'- -aUCGAGcugcgcucGGGUGcCGCCuGAGCUGAu -3'
miRNA:   3'- ccAGCUCuu------CCCACaGCGG-CUCGACU- -5'
7276 5' -56.1 NC_001900.1 + 16049 0.73 0.294317
Target:  5'- uGGUgGAGAcgcaacuGGGGgaagccgcgcccUCGCCGAGCUGAu -3'
miRNA:   3'- -CCAgCUCU-------UCCCac----------AGCGGCUCGACU- -5'
7276 5' -56.1 NC_001900.1 + 37422 0.77 0.163405
Target:  5'- cGUCGGGcuGGGUGUCGCCGA--UGAa -3'
miRNA:   3'- cCAGCUCuuCCCACAGCGGCUcgACU- -5'
7276 5' -56.1 NC_001900.1 + 6754 1.11 0.00057
Target:  5'- cGGUCGAGAAGGGUGUCGCCGAGCUGAu -3'
miRNA:   3'- -CCAGCUCUUCCCACAGCGGCUCGACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.