miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7277 5' -53.5 NC_001900.1 + 20854 0.66 0.781066
Target:  5'- cAUCga-ACGggUGCG-GGUCGCgGUCc -3'
miRNA:   3'- -UGGacgUGCuuAUGCuCCAGCGgUAG- -5'
7277 5' -53.5 NC_001900.1 + 31496 0.66 0.760341
Target:  5'- --gUGCGCGAGauggugGCGGGGUucaCGCCGUa -3'
miRNA:   3'- uggACGUGCUUa-----UGCUCCA---GCGGUAg -5'
7277 5' -53.5 NC_001900.1 + 9129 0.66 0.749765
Target:  5'- gGCCcGCACGGGccGgGuGGUgGCCGUCc -3'
miRNA:   3'- -UGGaCGUGCUUa-UgCuCCAgCGGUAG- -5'
7277 5' -53.5 NC_001900.1 + 31898 0.66 0.739064
Target:  5'- aGCUcGCcCGAGaccuCGGGGUCGCCAa- -3'
miRNA:   3'- -UGGaCGuGCUUau--GCUCCAGCGGUag -5'
7277 5' -53.5 NC_001900.1 + 41704 0.66 0.739064
Target:  5'- uACCUGCugGAGaucCaGGGUCGgugcuCCAUCg -3'
miRNA:   3'- -UGGACGugCUUau-GcUCCAGC-----GGUAG- -5'
7277 5' -53.5 NC_001900.1 + 38979 0.66 0.739064
Target:  5'- gGCCUGCG-GAGUcCGAGGggaCGUgAUCu -3'
miRNA:   3'- -UGGACGUgCUUAuGCUCCa--GCGgUAG- -5'
7277 5' -53.5 NC_001900.1 + 43201 0.67 0.732587
Target:  5'- gACCUGUucgucccacagcuccGCGAGgugGAGGUCGUgGUCc -3'
miRNA:   3'- -UGGACG---------------UGCUUaugCUCCAGCGgUAG- -5'
7277 5' -53.5 NC_001900.1 + 9032 0.67 0.695246
Target:  5'- -gCUGC-CGAAgcACcGGGUUGCCGUCg -3'
miRNA:   3'- ugGACGuGCUUa-UGcUCCAGCGGUAG- -5'
7277 5' -53.5 NC_001900.1 + 28308 0.67 0.6841
Target:  5'- -aCUGCACGAcgcuaccgACGAGGcCGUCcgCa -3'
miRNA:   3'- ugGACGUGCUua------UGCUCCaGCGGuaG- -5'
7277 5' -53.5 NC_001900.1 + 46292 0.67 0.6841
Target:  5'- gACCgcgacgGCAaGAAUACGaAGGUaucggcgaGCCAUCg -3'
miRNA:   3'- -UGGa-----CGUgCUUAUGC-UCCAg-------CGGUAG- -5'
7277 5' -53.5 NC_001900.1 + 31429 0.68 0.616533
Target:  5'- gACCUG-AUGAAg--GAGGUCGCCGa- -3'
miRNA:   3'- -UGGACgUGCUUaugCUCCAGCGGUag -5'
7277 5' -53.5 NC_001900.1 + 36809 0.68 0.616533
Target:  5'- aACCaGCuCGGGcuugACGuGGUUGCCGUCa -3'
miRNA:   3'- -UGGaCGuGCUUa---UGCuCCAGCGGUAG- -5'
7277 5' -53.5 NC_001900.1 + 25285 0.69 0.594011
Target:  5'- gAUCUGCagauuGCGGAUGCuGGGGUUGUCgAUCa -3'
miRNA:   3'- -UGGACG-----UGCUUAUG-CUCCAGCGG-UAG- -5'
7277 5' -53.5 NC_001900.1 + 35985 0.69 0.582797
Target:  5'- gACCaGCAUGAucGCGAuGuUCGCCGUCg -3'
miRNA:   3'- -UGGaCGUGCUuaUGCUcC-AGCGGUAG- -5'
7277 5' -53.5 NC_001900.1 + 38857 0.7 0.510255
Target:  5'- aGCCUGCACGGaagcccagccgccgaGUAUuugGAGaGUCGCgGUCu -3'
miRNA:   3'- -UGGACGUGCU---------------UAUG---CUC-CAGCGgUAG- -5'
7277 5' -53.5 NC_001900.1 + 34727 0.73 0.376956
Target:  5'- cACaCUGCGCGAugGCGuGGUCGaucuCCAUCg -3'
miRNA:   3'- -UG-GACGUGCUuaUGCuCCAGC----GGUAG- -5'
7277 5' -53.5 NC_001900.1 + 33262 0.74 0.325345
Target:  5'- gACCUGgGCGuugaucccgACGAGGUUGCCAa- -3'
miRNA:   3'- -UGGACgUGCuua------UGCUCCAGCGGUag -5'
7277 5' -53.5 NC_001900.1 + 7121 1.1 0.000989
Target:  5'- gACCUGCACGAAUACGAGGUCGCCAUCg -3'
miRNA:   3'- -UGGACGUGCUUAUGCUCCAGCGGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.