miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7279 3' -51.1 NC_001900.1 + 20845 0.66 0.917411
Target:  5'- gGugCGGGUcGCGGucCUUGAUGU--ACCg -3'
miRNA:   3'- -CugGCUCA-UGCCu-GAGCUACAguUGG- -5'
7279 3' -51.1 NC_001900.1 + 10595 0.66 0.910949
Target:  5'- gGACCGu---CGGG-UCGgcGUCGACCa -3'
miRNA:   3'- -CUGGCucauGCCUgAGCuaCAGUUGG- -5'
7279 3' -51.1 NC_001900.1 + 12571 0.66 0.910949
Target:  5'- uGACCGAuGUaggucgggaACGGGCugUCGGUGcCGugCa -3'
miRNA:   3'- -CUGGCU-CA---------UGCCUG--AGCUACaGUugG- -5'
7279 3' -51.1 NC_001900.1 + 27469 0.66 0.904199
Target:  5'- gGGCCGAGccgcACGGcCUUGA-GcCGGCCg -3'
miRNA:   3'- -CUGGCUCa---UGCCuGAGCUaCaGUUGG- -5'
7279 3' -51.1 NC_001900.1 + 23805 0.66 0.904199
Target:  5'- -uCCGAcgACGGGCUCcg-GUCGGCUa -3'
miRNA:   3'- cuGGCUcaUGCCUGAGcuaCAGUUGG- -5'
7279 3' -51.1 NC_001900.1 + 28032 0.66 0.904199
Target:  5'- aACCGGGUGCGGAgcCGccaccGUCAcagGCCg -3'
miRNA:   3'- cUGGCUCAUGCCUgaGCua---CAGU---UGG- -5'
7279 3' -51.1 NC_001900.1 + 23514 0.66 0.897165
Target:  5'- cGGCCGGGUccguACGGACgaaccgugCGGUGUUcuguguGGCUc -3'
miRNA:   3'- -CUGGCUCA----UGCCUGa-------GCUACAG------UUGG- -5'
7279 3' -51.1 NC_001900.1 + 8920 0.66 0.889851
Target:  5'- cACCGGGUuguuCGGGCU-GgcGUUGACCu -3'
miRNA:   3'- cUGGCUCAu---GCCUGAgCuaCAGUUGG- -5'
7279 3' -51.1 NC_001900.1 + 34963 0.66 0.889851
Target:  5'- -cCCGguAGUG-GGugUCGAUcagGUCGACCa -3'
miRNA:   3'- cuGGC--UCAUgCCugAGCUA---CAGUUGG- -5'
7279 3' -51.1 NC_001900.1 + 1262 0.66 0.889851
Target:  5'- aGCUGGcgGCGGGUUCGGUGguUCGACCg -3'
miRNA:   3'- cUGGCUcaUGCCUGAGCUAC--AGUUGG- -5'
7279 3' -51.1 NC_001900.1 + 16694 0.67 0.882261
Target:  5'- aGACCGAGgcugcccgaGGugUCaacauccccgucGAUGUCAACg -3'
miRNA:   3'- -CUGGCUCaug------CCugAG------------CUACAGUUGg -5'
7279 3' -51.1 NC_001900.1 + 29950 0.67 0.882261
Target:  5'- cGAUCGAGgccaugACGuGAC-CGggGUCAGCg -3'
miRNA:   3'- -CUGGCUCa-----UGC-CUGaGCuaCAGUUGg -5'
7279 3' -51.1 NC_001900.1 + 40422 0.67 0.877578
Target:  5'- cGCCGAGcACGGguuccgagucaucgcACUCGAcgcgGcCAACCa -3'
miRNA:   3'- cUGGCUCaUGCC---------------UGAGCUa---CaGUUGG- -5'
7279 3' -51.1 NC_001900.1 + 14039 0.67 0.866279
Target:  5'- uGCCGAcGUAcCGGACUgGuUGgCGACCu -3'
miRNA:   3'- cUGGCU-CAU-GCCUGAgCuACaGUUGG- -5'
7279 3' -51.1 NC_001900.1 + 2349 0.67 0.857899
Target:  5'- aGAgUGAGUugGGccgGCUCGAagcGUCGGCa -3'
miRNA:   3'- -CUgGCUCAugCC---UGAGCUa--CAGUUGg -5'
7279 3' -51.1 NC_001900.1 + 4882 0.67 0.849272
Target:  5'- aACCG-GUACGG-CUCGAcUGagagcuuccggcUCGACCa -3'
miRNA:   3'- cUGGCuCAUGCCuGAGCU-AC------------AGUUGG- -5'
7279 3' -51.1 NC_001900.1 + 13338 0.67 0.849272
Target:  5'- uGAUCGAGcGCcGACUCGAacagGUCGAgCg -3'
miRNA:   3'- -CUGGCUCaUGcCUGAGCUa---CAGUUgG- -5'
7279 3' -51.1 NC_001900.1 + 3300 0.67 0.849272
Target:  5'- uGCCGAGgucggccaUGCGGAUccuuucaaguUCGGaggGUCAACCc -3'
miRNA:   3'- cUGGCUC--------AUGCCUG----------AGCUa--CAGUUGG- -5'
7279 3' -51.1 NC_001900.1 + 4330 0.67 0.849272
Target:  5'- --aCGAGgaaGGACUCGAaccuUCAACCg -3'
miRNA:   3'- cugGCUCaugCCUGAGCUac--AGUUGG- -5'
7279 3' -51.1 NC_001900.1 + 28960 0.68 0.821992
Target:  5'- cGACCcaGGUACGGGa-UGAUGUUGGCCc -3'
miRNA:   3'- -CUGGc-UCAUGCCUgaGCUACAGUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.