miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7279 5' -57.9 NC_001900.1 + 7968 1.01 0.0017
Target:  5'- gGUGGCCGCAUCGAGGC-GCAACCUCCu -3'
miRNA:   3'- -CACCGGCGUAGCUCCGuCGUUGGAGG- -5'
7279 5' -57.9 NC_001900.1 + 6113 0.76 0.121044
Target:  5'- cUGGCC-CAgaUCGAGGCAGCcAACC-CCg -3'
miRNA:   3'- cACCGGcGU--AGCUCCGUCG-UUGGaGG- -5'
7279 5' -57.9 NC_001900.1 + 16988 0.75 0.136819
Target:  5'- uGUGGUCGCAcUCGgcauggacggcaucaAGGCGGCAGCCgagaCCa -3'
miRNA:   3'- -CACCGGCGU-AGC---------------UCCGUCGUUGGa---GG- -5'
7279 5' -57.9 NC_001900.1 + 5985 0.75 0.142222
Target:  5'- -gGGCCGCccgcuacGUCGAGGaaucggcgcgagcCGGUGACCUCCg -3'
miRNA:   3'- caCCGGCG-------UAGCUCC-------------GUCGUUGGAGG- -5'
7279 5' -57.9 NC_001900.1 + 23065 0.74 0.164037
Target:  5'- aGUGGCUGCGggacaccgCGAGccaGGUAGCCUCCg -3'
miRNA:   3'- -CACCGGCGUa-------GCUCcg-UCGUUGGAGG- -5'
7279 5' -57.9 NC_001900.1 + 6786 0.73 0.198132
Target:  5'- -aGGCCGCAgCGGGGUAGUuGCCgaugggcugCCa -3'
miRNA:   3'- caCCGGCGUaGCUCCGUCGuUGGa--------GG- -5'
7279 5' -57.9 NC_001900.1 + 37284 0.72 0.244498
Target:  5'- -cGGcCCGCAgCGGGGcCAGgAACCUCg -3'
miRNA:   3'- caCC-GGCGUaGCUCC-GUCgUUGGAGg -5'
7279 5' -57.9 NC_001900.1 + 44081 0.71 0.25089
Target:  5'- -gGGUCGaaCAUCGAGGCuGCGauGCCUUCc -3'
miRNA:   3'- caCCGGC--GUAGCUCCGuCGU--UGGAGG- -5'
7279 5' -57.9 NC_001900.1 + 10453 0.71 0.256102
Target:  5'- cUGGCCGUugccauagagcuUCGuGGCGGCGucaGCCUUCg -3'
miRNA:   3'- cACCGGCGu-----------AGCuCCGUCGU---UGGAGG- -5'
7279 5' -57.9 NC_001900.1 + 4020 0.71 0.256759
Target:  5'- -cGGCCGCGUUcgccgugGAGGCGGguACCg-- -3'
miRNA:   3'- caCCGGCGUAG-------CUCCGUCguUGGagg -5'
7279 5' -57.9 NC_001900.1 + 23605 0.71 0.270891
Target:  5'- uGUGaGCCGCcccggaaGAGGCcuGCAGCCUCa -3'
miRNA:   3'- -CAC-CGGCGuag----CUCCGu-CGUUGGAGg -5'
7279 5' -57.9 NC_001900.1 + 46156 0.71 0.270891
Target:  5'- -aGGCCGUugcgCGAaGCGGCAGCUUCg -3'
miRNA:   3'- caCCGGCGua--GCUcCGUCGUUGGAGg -5'
7279 5' -57.9 NC_001900.1 + 7147 0.7 0.314704
Target:  5'- -cGGCCGgAUCGugaugaAGGcCAGCGGCUUCa -3'
miRNA:   3'- caCCGGCgUAGC------UCC-GUCGUUGGAGg -5'
7279 5' -57.9 NC_001900.1 + 1433 0.7 0.314704
Target:  5'- cUGGUCGC----GGGCGGCGACCgCCa -3'
miRNA:   3'- cACCGGCGuagcUCCGUCGUUGGaGG- -5'
7279 5' -57.9 NC_001900.1 + 36987 0.7 0.314704
Target:  5'- uGUGGUCG-AUgGAGGuCGGCAACCUg- -3'
miRNA:   3'- -CACCGGCgUAgCUCC-GUCGUUGGAgg -5'
7279 5' -57.9 NC_001900.1 + 1249 0.7 0.322507
Target:  5'- -cGGCCGCuUCc-GGCGGCccaccgccGCCUCCa -3'
miRNA:   3'- caCCGGCGuAGcuCCGUCGu-------UGGAGG- -5'
7279 5' -57.9 NC_001900.1 + 23447 0.7 0.322507
Target:  5'- aUGGCCGUccuugAUCGc-GUAGUAGCCUCUg -3'
miRNA:   3'- cACCGGCG-----UAGCucCGUCGUUGGAGG- -5'
7279 5' -57.9 NC_001900.1 + 25670 0.69 0.363666
Target:  5'- --cGCCGCGacgUGAGGCGGCAcggucACCggCCg -3'
miRNA:   3'- cacCGGCGUa--GCUCCGUCGU-----UGGa-GG- -5'
7279 5' -57.9 NC_001900.1 + 34085 0.69 0.372323
Target:  5'- -cGGCCGCucuGUCGAccucaGCGGCcAUCUCCc -3'
miRNA:   3'- caCCGGCG---UAGCUc----CGUCGuUGGAGG- -5'
7279 5' -57.9 NC_001900.1 + 40333 0.69 0.372323
Target:  5'- uUGGCCGCGUCGAGu--GCGAUgaCUCg -3'
miRNA:   3'- cACCGGCGUAGCUCcguCGUUG--GAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.