miRNA display CGI


Results 41 - 45 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7279 5' -57.9 NC_001900.1 + 23065 0.74 0.164037
Target:  5'- aGUGGCUGCGggacaccgCGAGccaGGUAGCCUCCg -3'
miRNA:   3'- -CACCGGCGUa-------GCUCcg-UCGUUGGAGG- -5'
7279 5' -57.9 NC_001900.1 + 5985 0.75 0.142222
Target:  5'- -gGGCCGCccgcuacGUCGAGGaaucggcgcgagcCGGUGACCUCCg -3'
miRNA:   3'- caCCGGCG-------UAGCUCC-------------GUCGUUGGAGG- -5'
7279 5' -57.9 NC_001900.1 + 16988 0.75 0.136819
Target:  5'- uGUGGUCGCAcUCGgcauggacggcaucaAGGCGGCAGCCgagaCCa -3'
miRNA:   3'- -CACCGGCGU-AGC---------------UCCGUCGUUGGa---GG- -5'
7279 5' -57.9 NC_001900.1 + 6113 0.76 0.121044
Target:  5'- cUGGCC-CAgaUCGAGGCAGCcAACC-CCg -3'
miRNA:   3'- cACCGGcGU--AGCUCCGUCG-UUGGaGG- -5'
7279 5' -57.9 NC_001900.1 + 7968 1.01 0.0017
Target:  5'- gGUGGCCGCAUCGAGGC-GCAACCUCCu -3'
miRNA:   3'- -CACCGGCGUAGCUCCGuCGUUGGAGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.