Results 41 - 45 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
7279 | 5' | -57.9 | NC_001900.1 | + | 23065 | 0.74 | 0.164037 |
Target: 5'- aGUGGCUGCGggacaccgCGAGccaGGUAGCCUCCg -3' miRNA: 3'- -CACCGGCGUa-------GCUCcg-UCGUUGGAGG- -5' |
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7279 | 5' | -57.9 | NC_001900.1 | + | 5985 | 0.75 | 0.142222 |
Target: 5'- -gGGCCGCccgcuacGUCGAGGaaucggcgcgagcCGGUGACCUCCg -3' miRNA: 3'- caCCGGCG-------UAGCUCC-------------GUCGUUGGAGG- -5' |
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7279 | 5' | -57.9 | NC_001900.1 | + | 16988 | 0.75 | 0.136819 |
Target: 5'- uGUGGUCGCAcUCGgcauggacggcaucaAGGCGGCAGCCgagaCCa -3' miRNA: 3'- -CACCGGCGU-AGC---------------UCCGUCGUUGGa---GG- -5' |
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7279 | 5' | -57.9 | NC_001900.1 | + | 6113 | 0.76 | 0.121044 |
Target: 5'- cUGGCC-CAgaUCGAGGCAGCcAACC-CCg -3' miRNA: 3'- cACCGGcGU--AGCUCCGUCG-UUGGaGG- -5' |
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7279 | 5' | -57.9 | NC_001900.1 | + | 7968 | 1.01 | 0.0017 |
Target: 5'- gGUGGCCGCAUCGAGGC-GCAACCUCCu -3' miRNA: 3'- -CACCGGCGUAGCUCCGuCGUUGGAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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