miRNA display CGI


Results 1 - 12 of 12 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
728 3' -57.7 AC_000020.1 + 14737 0.66 0.461654
Target:  5'- cCCCGGCGUCccuaCCAgugGCGgggucGGCGCg -3'
miRNA:   3'- -GGGCCGCGGccg-GGUauaUGU-----UCGCG- -5'
728 3' -57.7 AC_000020.1 + 31106 0.66 0.441577
Target:  5'- aCCCggGGCGCCGGCCaaaaGUccGCGGaacuCGCc -3'
miRNA:   3'- -GGG--CCGCGGCCGGg---UAuaUGUUc---GCG- -5'
728 3' -57.7 AC_000020.1 + 218 0.66 0.441577
Target:  5'- aCCCggGGCGCCGGCCaaaaGUccGCGGaacuCGCc -3'
miRNA:   3'- -GGG--CCGCGGCCGGg---UAuaUGUUc---GCG- -5'
728 3' -57.7 AC_000020.1 + 16478 0.67 0.375442
Target:  5'- aCCCGaaGCGCaGGCCCcgcuggugGUACAaauacccaaaaAGCGCc -3'
miRNA:   3'- -GGGC--CGCGgCCGGGua------UAUGU-----------UCGCG- -5'
728 3' -57.7 AC_000020.1 + 15905 0.67 0.365675
Target:  5'- gUCGGCGCgGacggcGCCCAcgcggcaUAcgcUGCGGGCGCa -3'
miRNA:   3'- gGGCCGCGgC-----CGGGU-------AU---AUGUUCGCG- -5'
728 3' -57.7 AC_000020.1 + 14260 0.67 0.357815
Target:  5'- cCCCGcGgGCuCGGCCUugacgGCGgcGGCGCc -3'
miRNA:   3'- -GGGC-CgCG-GCCGGGuaua-UGU--UCGCG- -5'
728 3' -57.7 AC_000020.1 + 12656 0.68 0.332479
Target:  5'- uCCUGGCGCCGcugguaccCCCGcgGUACAaaGGgGCu -3'
miRNA:   3'- -GGGCCGCGGCc-------GGGUa-UAUGU--UCgCG- -5'
728 3' -57.7 AC_000020.1 + 27239 0.7 0.257706
Target:  5'- --aGGUGCCGGCCUugccGUGCAgAGCGg -3'
miRNA:   3'- gggCCGCGGCCGGGua--UAUGU-UCGCg -5'
728 3' -57.7 AC_000020.1 + 9350 0.7 0.238125
Target:  5'- cCCUGGCGCaGGUUCA---GCAAGCGg -3'
miRNA:   3'- -GGGCCGCGgCCGGGUauaUGUUCGCg -5'
728 3' -57.7 AC_000020.1 + 22952 0.71 0.225774
Target:  5'- gCCaGGCGCUuGCCCAUG---AGGCGCu -3'
miRNA:   3'- gGG-CCGCGGcCGGGUAUaugUUCGCG- -5'
728 3' -57.7 AC_000020.1 + 1889 0.72 0.185232
Target:  5'- aCCUGGCGguCUGGCuCCAUAUcuGCAuucugcuccaugccGGCGCa -3'
miRNA:   3'- -GGGCCGC--GGCCG-GGUAUA--UGU--------------UCGCG- -5'
728 3' -57.7 AC_000020.1 + 2905 1.14 0.00013
Target:  5'- cCCCGGCGCCGGCCCAUAUACAAGCGCa -3'
miRNA:   3'- -GGGCCGCGGCCGGGUAUAUGUUCGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.