miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7280 3' -49.9 NC_001900.1 + 6337 0.66 0.955906
Target:  5'- cGAUGUUCGcggcugcgcccgCGUcgaucccgccccagaUCAGGGCGAuGCCCa -3'
miRNA:   3'- -CUGCAAGCa-----------GCA---------------AGUCUUGCUcUGGG- -5'
7280 3' -49.9 NC_001900.1 + 12990 0.66 0.950616
Target:  5'- aGGCGUUCGUCGcucugaccaacguggUCAGcggcggcGGCGAGGgCUg -3'
miRNA:   3'- -CUGCAAGCAGCa--------------AGUC-------UUGCUCUgGG- -5'
7280 3' -49.9 NC_001900.1 + 38314 0.66 0.940892
Target:  5'- gGAUGaUUCGUgCGUUCGGcAGCGucuuGGCCa -3'
miRNA:   3'- -CUGC-AAGCA-GCAAGUC-UUGCu---CUGGg -5'
7280 3' -49.9 NC_001900.1 + 9052 0.66 0.935597
Target:  5'- -uCGUUUGgCGUUCAGGACGuGcuGCCg -3'
miRNA:   3'- cuGCAAGCaGCAAGUCUUGCuC--UGGg -5'
7280 3' -49.9 NC_001900.1 + 46718 0.67 0.904733
Target:  5'- aGACGUUCGggg-UCGGccGACGAGACa- -3'
miRNA:   3'- -CUGCAAGCagcaAGUC--UUGCUCUGgg -5'
7280 3' -49.9 NC_001900.1 + 35999 0.67 0.904733
Target:  5'- cGAUGUUCGcCGUcgggUCAGAGu--GGCCCu -3'
miRNA:   3'- -CUGCAAGCaGCA----AGUCUUgcuCUGGG- -5'
7280 3' -49.9 NC_001900.1 + 9555 0.69 0.849683
Target:  5'- gGACGUaagCGUCGgugUAGcccAGCGGGGCCUc -3'
miRNA:   3'- -CUGCAa--GCAGCaa-GUC---UUGCUCUGGG- -5'
7280 3' -49.9 NC_001900.1 + 17708 0.69 0.831661
Target:  5'- uGGCGUcagCGcCGUgaugaUCGGAGCGAGcugaguGCCCa -3'
miRNA:   3'- -CUGCAa--GCaGCA-----AGUCUUGCUC------UGGG- -5'
7280 3' -49.9 NC_001900.1 + 10583 0.69 0.822311
Target:  5'- cGGCG-UCGaccaUCGUgcccagCAGGcCGAGGCCCa -3'
miRNA:   3'- -CUGCaAGC----AGCAa-----GUCUuGCUCUGGG- -5'
7280 3' -49.9 NC_001900.1 + 9083 0.7 0.81275
Target:  5'- -cUGUccUCG-CGUUCGGGGCGAGACa- -3'
miRNA:   3'- cuGCA--AGCaGCAAGUCUUGCUCUGgg -5'
7280 3' -49.9 NC_001900.1 + 24211 0.7 0.802987
Target:  5'- cGACGUgUUGUCGacCAGGugGAG-CCUa -3'
miRNA:   3'- -CUGCA-AGCAGCaaGUCUugCUCuGGG- -5'
7280 3' -49.9 NC_001900.1 + 41327 0.7 0.802987
Target:  5'- -cCGUUUGUCGUUuaagcCAGGGCGGuuCCCg -3'
miRNA:   3'- cuGCAAGCAGCAA-----GUCUUGCUcuGGG- -5'
7280 3' -49.9 NC_001900.1 + 34607 0.7 0.793035
Target:  5'- aGAUGUUCGUgGUcCAG--UGAGAUCCg -3'
miRNA:   3'- -CUGCAAGCAgCAaGUCuuGCUCUGGG- -5'
7280 3' -49.9 NC_001900.1 + 32441 0.71 0.762158
Target:  5'- gGACGUUCaGUCGUUCgcccaGGAggcguACGAGuACCUc -3'
miRNA:   3'- -CUGCAAG-CAGCAAG-----UCU-----UGCUC-UGGG- -5'
7280 3' -49.9 NC_001900.1 + 11843 0.71 0.73001
Target:  5'- cGCGUUCGUUGacaucuugCAGGGCGAGgACgCCg -3'
miRNA:   3'- cUGCAAGCAGCaa------GUCUUGCUC-UG-GG- -5'
7280 3' -49.9 NC_001900.1 + 8022 1.14 0.001793
Target:  5'- cGACGUUCGUCGUUCAGAACGAGACCCa -3'
miRNA:   3'- -CUGCAAGCAGCAAGUCUUGCUCUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.