miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7281 3' -58 NC_001900.1 + 8787 0.66 0.53099
Target:  5'- --aCUGCAGCGUCCACGaaCUCgcggGGCAc -3'
miRNA:   3'- cuaGACGUUGCGGGUGUagGGG----CCGU- -5'
7281 3' -58 NC_001900.1 + 12003 0.66 0.53099
Target:  5'- cGAUCcuCAACGCCaugaaggGCGUUCUCGGCAu -3'
miRNA:   3'- -CUAGacGUUGCGGg------UGUAGGGGCCGU- -5'
7281 3' -58 NC_001900.1 + 1938 0.66 0.520399
Target:  5'- uGAUC-GCAuucggauuCGCCCGCAggccgaggccgUCaCCCGGCu -3'
miRNA:   3'- -CUAGaCGUu-------GCGGGUGU-----------AG-GGGCCGu -5'
7281 3' -58 NC_001900.1 + 19174 0.66 0.489154
Target:  5'- cGUCUGUGgccaggaacACGCCCugGUCaCCGGUc -3'
miRNA:   3'- cUAGACGU---------UGCGGGugUAGgGGCCGu -5'
7281 3' -58 NC_001900.1 + 29552 0.66 0.489154
Target:  5'- gGAUCUGguaguuCAGCGCCgagUACGUCCgagagcgguccaCCGGCAg -3'
miRNA:   3'- -CUAGAC------GUUGCGG---GUGUAGG------------GGCCGU- -5'
7281 3' -58 NC_001900.1 + 20785 0.66 0.478933
Target:  5'- gGAUCUGCuuCGCCgugucguagaACGUCCCgaacCGGCu -3'
miRNA:   3'- -CUAGACGuuGCGGg---------UGUAGGG----GCCGu -5'
7281 3' -58 NC_001900.1 + 40961 0.66 0.478933
Target:  5'- cGAUCUGCuGgGCCUGCAgaaUCCCgaacgGGCAu -3'
miRNA:   3'- -CUAGACGuUgCGGGUGU---AGGGg----CCGU- -5'
7281 3' -58 NC_001900.1 + 24048 0.67 0.458814
Target:  5'- gGAUCUGCAggAUGCCgACGaCgCCGGUu -3'
miRNA:   3'- -CUAGACGU--UGCGGgUGUaGgGGCCGu -5'
7281 3' -58 NC_001900.1 + 13751 0.67 0.429507
Target:  5'- cGGUCUGCuacuGCGUCCACGa--CUGGCGc -3'
miRNA:   3'- -CUAGACGu---UGCGGGUGUaggGGCCGU- -5'
7281 3' -58 NC_001900.1 + 6188 0.67 0.423779
Target:  5'- aGAUCcGUgaAACGCuCUACuacgucggcacucucGUCCCCGGCAu -3'
miRNA:   3'- -CUAGaCG--UUGCG-GGUG---------------UAGGGGCCGU- -5'
7281 3' -58 NC_001900.1 + 30576 0.68 0.401331
Target:  5'- gGAUCUGCAguGCGCUgGCA-CCgCUGGUg -3'
miRNA:   3'- -CUAGACGU--UGCGGgUGUaGG-GGCCGu -5'
7281 3' -58 NC_001900.1 + 18734 0.68 0.383212
Target:  5'- --cCUGCAGCGCCgCACGg--CCGGCc -3'
miRNA:   3'- cuaGACGUUGCGG-GUGUaggGGCCGu -5'
7281 3' -58 NC_001900.1 + 25735 0.68 0.365645
Target:  5'- cGAUCUucucGcCGACGCgggCCGCG-CCCCGGCGc -3'
miRNA:   3'- -CUAGA----C-GUUGCG---GGUGUaGGGGCCGU- -5'
7281 3' -58 NC_001900.1 + 31417 0.69 0.340354
Target:  5'- cGAUCgGUAGCGCCU-CAUCaCgCGGCAg -3'
miRNA:   3'- -CUAGaCGUUGCGGGuGUAG-GgGCCGU- -5'
7281 3' -58 NC_001900.1 + 34461 0.75 0.135771
Target:  5'- --gCUGCugu-CCCACAUCCCCGGCu -3'
miRNA:   3'- cuaGACGuugcGGGUGUAGGGGCCGu -5'
7281 3' -58 NC_001900.1 + 8151 1.08 0.000479
Target:  5'- cGAUCUGCAACGCCCACAUCCCCGGCAc -3'
miRNA:   3'- -CUAGACGUUGCGGGUGUAGGGGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.