miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7281 5' -55.2 NC_001900.1 + 16814 0.66 0.698127
Target:  5'- -aCGCCGcGAAGGCGU-CGUCucaGGUu -3'
miRNA:   3'- caGCGGCuCUUCCGCAuGCAGc--UCAc -5'
7281 5' -55.2 NC_001900.1 + 22758 0.66 0.686151
Target:  5'- cUCGCgGAGGAGG-GUGaucgcguUGUCGAGUc -3'
miRNA:   3'- cAGCGgCUCUUCCgCAU-------GCAGCUCAc -5'
7281 5' -55.2 NC_001900.1 + 44731 0.66 0.676304
Target:  5'- uGUCGCCGAGgcGGUcgagGUAUGg-GAGUc -3'
miRNA:   3'- -CAGCGGCUCuuCCG----CAUGCagCUCAc -5'
7281 5' -55.2 NC_001900.1 + 1142 0.67 0.654312
Target:  5'- --aGCCGGGGcAGGCG-GCGU-GGGUGg -3'
miRNA:   3'- cagCGGCUCU-UCCGCaUGCAgCUCAC- -5'
7281 5' -55.2 NC_001900.1 + 10424 0.67 0.632238
Target:  5'- cGUCaGCCuucgcGGCGUACGUCGGGg- -3'
miRNA:   3'- -CAG-CGGcucuuCCGCAUGCAGCUCac -5'
7281 5' -55.2 NC_001900.1 + 26322 0.67 0.631133
Target:  5'- -cCGCCGgccgagcgcgagaAGAAGGC-UGCGgCGAGUGc -3'
miRNA:   3'- caGCGGC-------------UCUUCCGcAUGCaGCUCAC- -5'
7281 5' -55.2 NC_001900.1 + 25952 0.67 0.621195
Target:  5'- aGUgGCCGGGGAGGUGU---UCGAGc- -3'
miRNA:   3'- -CAgCGGCUCUUCCGCAugcAGCUCac -5'
7281 5' -55.2 NC_001900.1 + 37073 0.67 0.621195
Target:  5'- -aCGCCGccacGguGGcCGUGCGUCGAGa- -3'
miRNA:   3'- caGCGGCu---CuuCC-GCAUGCAGCUCac -5'
7281 5' -55.2 NC_001900.1 + 32428 0.68 0.599148
Target:  5'- uUCGCCcAGGAGGCGUA---CGAGUa -3'
miRNA:   3'- cAGCGGcUCUUCCGCAUgcaGCUCAc -5'
7281 5' -55.2 NC_001900.1 + 4012 0.68 0.588163
Target:  5'- uUCGCCGuGGAGGCGgguaccgGCGUCu---- -3'
miRNA:   3'- cAGCGGCuCUUCCGCa------UGCAGcucac -5'
7281 5' -55.2 NC_001900.1 + 2221 0.68 0.55222
Target:  5'- gGUgGCUGGGAGGGCcuggagauccuugaGUAC-UCGGGUGa -3'
miRNA:   3'- -CAgCGGCUCUUCCG--------------CAUGcAGCUCAC- -5'
7281 5' -55.2 NC_001900.1 + 31975 0.69 0.544676
Target:  5'- -cCGCCGAGGAGaccgaGCGguucCGUCGAGa- -3'
miRNA:   3'- caGCGGCUCUUC-----CGCau--GCAGCUCac -5'
7281 5' -55.2 NC_001900.1 + 21546 0.69 0.502282
Target:  5'- -aCGCCGAGAGGGUGaACGccuucaUCGGGcUGu -3'
miRNA:   3'- caGCGGCUCUUCCGCaUGC------AGCUC-AC- -5'
7281 5' -55.2 NC_001900.1 + 41833 0.7 0.481628
Target:  5'- cUCGCCGccGGucuGGGC-UugGUCGGGUGu -3'
miRNA:   3'- cAGCGGC--UCu--UCCGcAugCAGCUCAC- -5'
7281 5' -55.2 NC_001900.1 + 35261 0.72 0.376414
Target:  5'- -gCGCCucauGGAGGGCGgugGCGUCGGGg- -3'
miRNA:   3'- caGCGGc---UCUUCCGCa--UGCAGCUCac -5'
7281 5' -55.2 NC_001900.1 + 8185 1.09 0.001003
Target:  5'- gGUCGCCGAGAAGGCGUACGUCGAGUGg -3'
miRNA:   3'- -CAGCGGCUCUUCCGCAUGCAGCUCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.