miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7282 3' -55.6 NC_001900.1 + 21273 0.66 0.698127
Target:  5'- cGCCaCCGAUgUucaccagggCCGAGAUCCCcUCguUGAu -3'
miRNA:   3'- -UGG-GGCUAgA---------GGCUCUAGGGaAG--ACU- -5'
7282 3' -55.6 NC_001900.1 + 13662 0.66 0.665324
Target:  5'- gGCUCCGAUCaaguacccgCCGGGGUUUCUcCUGGc -3'
miRNA:   3'- -UGGGGCUAGa--------GGCUCUAGGGAaGACU- -5'
7282 3' -55.6 NC_001900.1 + 3467 0.66 0.65872
Target:  5'- cACCCCGGccaUCgacuacaacgacgugUCCGAGAaCCCgcagggUCUGGc -3'
miRNA:   3'- -UGGGGCU---AG---------------AGGCUCUaGGGa-----AGACU- -5'
7282 3' -55.6 NC_001900.1 + 33685 0.66 0.654312
Target:  5'- cGCCgCCGAUCUgCaGAGGUUCuCUgggCUGAu -3'
miRNA:   3'- -UGG-GGCUAGAgG-CUCUAGG-GAa--GACU- -5'
7282 3' -55.6 NC_001900.1 + 2826 0.66 0.64328
Target:  5'- gUCCCGAUCaUCGAGAUCgUUUCg-- -3'
miRNA:   3'- uGGGGCUAGaGGCUCUAGgGAAGacu -5'
7282 3' -55.6 NC_001900.1 + 29713 0.67 0.621195
Target:  5'- uUCgCGGUCUCgauCGAGAUCCCagUCUGc -3'
miRNA:   3'- uGGgGCUAGAG---GCUCUAGGGa-AGACu -5'
7282 3' -55.6 NC_001900.1 + 18545 0.67 0.599148
Target:  5'- gACCCC----UCCGGGAUCCUcgCUGGu -3'
miRNA:   3'- -UGGGGcuagAGGCUCUAGGGaaGACU- -5'
7282 3' -55.6 NC_001900.1 + 14577 0.67 0.599148
Target:  5'- uGCUCCGAUcCUCCGAGAagaCCCUcgacUCg-- -3'
miRNA:   3'- -UGGGGCUA-GAGGCUCUa--GGGA----AGacu -5'
7282 3' -55.6 NC_001900.1 + 27315 0.67 0.577215
Target:  5'- aACCCCuGGUCagaagaggcUCUGAGAUCgaUUCUGAg -3'
miRNA:   3'- -UGGGG-CUAG---------AGGCUCUAGggAAGACU- -5'
7282 3' -55.6 NC_001900.1 + 47775 0.69 0.512754
Target:  5'- gUCCCGAcCUCCGAGAUCgCUgCaGAg -3'
miRNA:   3'- uGGGGCUaGAGGCUCUAGgGAaGaCU- -5'
7282 3' -55.6 NC_001900.1 + 16066 0.69 0.471456
Target:  5'- gGCCCgGAUC-CUGGGAUCCuCUUCc-- -3'
miRNA:   3'- -UGGGgCUAGaGGCUCUAGG-GAAGacu -5'
7282 3' -55.6 NC_001900.1 + 913 0.7 0.441619
Target:  5'- gGCCCC---CUCCGGGAUCCCgUCg-- -3'
miRNA:   3'- -UGGGGcuaGAGGCUCUAGGGaAGacu -5'
7282 3' -55.6 NC_001900.1 + 34896 0.7 0.422332
Target:  5'- gACCgaGGUCUCCGAGAUCCUgagCcGGu -3'
miRNA:   3'- -UGGggCUAGAGGCUCUAGGGaa-GaCU- -5'
7282 3' -55.6 NC_001900.1 + 26171 0.7 0.41288
Target:  5'- cACCCCGGUCgCCGAGAUgacccccgCCCUUg--- -3'
miRNA:   3'- -UGGGGCUAGaGGCUCUA--------GGGAAgacu -5'
7282 3' -55.6 NC_001900.1 + 37610 0.72 0.318021
Target:  5'- cGCCaaGAUCUCCGAgGGUCCgUUCgugGAg -3'
miRNA:   3'- -UGGggCUAGAGGCU-CUAGGgAAGa--CU- -5'
7282 3' -55.6 NC_001900.1 + 13558 0.73 0.287836
Target:  5'- cGCCCCGucgGUCUCCGAGAgguagCCCUcCgGGu -3'
miRNA:   3'- -UGGGGC---UAGAGGCUCUa----GGGAaGaCU- -5'
7282 3' -55.6 NC_001900.1 + 8281 1.09 0.000889
Target:  5'- cACCCCGAUCUCCGAGAUCCCUUCUGAg -3'
miRNA:   3'- -UGGGGCUAGAGGCUCUAGGGAAGACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.