miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7282 5' -60.6 NC_001900.1 + 10898 0.66 0.413952
Target:  5'- cUCUCGuuGCGGGgaagcUCCGGGuGGUGGAg- -3'
miRNA:   3'- uAGGGC--UGCCCa----AGGCCC-UCGCCUag -5'
7282 5' -60.6 NC_001900.1 + 26141 0.66 0.378472
Target:  5'- uGUCCgGGCGuGGUgggCCGGGA-UGGGUa -3'
miRNA:   3'- -UAGGgCUGC-CCAa--GGCCCUcGCCUAg -5'
7282 5' -60.6 NC_001900.1 + 38522 0.67 0.345092
Target:  5'- gAUCCCGACGGucggcGUUCCaGGGGCucaGAUg -3'
miRNA:   3'- -UAGGGCUGCC-----CAAGGcCCUCGc--CUAg -5'
7282 5' -60.6 NC_001900.1 + 19758 0.67 0.337084
Target:  5'- cUCCCGGCGGGaacggCCaGGGGaagucagGGAUCu -3'
miRNA:   3'- uAGGGCUGCCCaa---GGcCCUCg------CCUAG- -5'
7282 5' -60.6 NC_001900.1 + 44434 0.67 0.329212
Target:  5'- -aCUCGACGGGaUCCuGGuucGCGGAUa -3'
miRNA:   3'- uaGGGCUGCCCaAGGcCCu--CGCCUAg -5'
7282 5' -60.6 NC_001900.1 + 3255 0.68 0.28485
Target:  5'- -cCCCGGCGGGggagcagUCGGuAGCGGAa- -3'
miRNA:   3'- uaGGGCUGCCCaa-----GGCCcUCGCCUag -5'
7282 5' -60.6 NC_001900.1 + 28074 0.69 0.254137
Target:  5'- -gCCCGaACGGcGUgaucuucgugcccgCCGGGGGCGGcGUCa -3'
miRNA:   3'- uaGGGC-UGCC-CAa-------------GGCCCUCGCC-UAG- -5'
7282 5' -60.6 NC_001900.1 + 1172 0.69 0.249709
Target:  5'- cGUCCU--CGGGUUCCaGGGgcaccgccgcuaccGGCGGAUCc -3'
miRNA:   3'- -UAGGGcuGCCCAAGG-CCC--------------UCGCCUAG- -5'
7282 5' -60.6 NC_001900.1 + 34978 0.69 0.245345
Target:  5'- uGUCCCG-CG---UCCGGGcGGCGGGUCg -3'
miRNA:   3'- -UAGGGCuGCccaAGGCCC-UCGCCUAG- -5'
7282 5' -60.6 NC_001900.1 + 20585 0.73 0.137819
Target:  5'- -aUCCGACGGacaUCUGGGAGUGGAUg -3'
miRNA:   3'- uaGGGCUGCCca-AGGCCCUCGCCUAg -5'
7282 5' -60.6 NC_001900.1 + 8315 0.91 0.006544
Target:  5'- aAUCCCGACGGGUUCCGGGAG-GGcAUCg -3'
miRNA:   3'- -UAGGGCUGCCCAAGGCCCUCgCC-UAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.