Results 21 - 29 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7285 | 3' | -52.6 | NC_001900.1 | + | 10105 | 0.74 | 0.368672 |
Target: 5'- uGCUGGAucuuGCCUUCGGcguccUCGAACGCCAGg -3' miRNA: 3'- uUGGUCU----UGGAGGCU-----AGCUUGUGGUC- -5' |
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7285 | 3' | -52.6 | NC_001900.1 | + | 14250 | 0.71 | 0.527463 |
Target: 5'- cAUCAGAACCUCuUGAUCGuguagucgacccGCGCCAGu -3' miRNA: 3'- uUGGUCUUGGAG-GCUAGCu-----------UGUGGUC- -5' |
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7285 | 3' | -52.6 | NC_001900.1 | + | 23873 | 0.69 | 0.664835 |
Target: 5'- cGACCGGAGCCcgUCG-UCGGACcacaggGCCAGu -3' miRNA: 3'- -UUGGUCUUGGa-GGCuAGCUUG------UGGUC- -5' |
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7285 | 3' | -52.6 | NC_001900.1 | + | 13944 | 0.68 | 0.720817 |
Target: 5'- uGACCAGcuCUUCgGGguagaCGAGCACCGGc -3' miRNA: 3'- -UUGGUCuuGGAGgCUa----GCUUGUGGUC- -5' |
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7285 | 3' | -52.6 | NC_001900.1 | + | 4962 | 0.67 | 0.742639 |
Target: 5'- gAGCCGGAAgCUCUcaGUCGAGCcguACCGGu -3' miRNA: 3'- -UUGGUCUUgGAGGc-UAGCUUG---UGGUC- -5' |
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7285 | 3' | -52.6 | NC_001900.1 | + | 11607 | 0.67 | 0.763984 |
Target: 5'- cGGCCGGAguGCCUUCGGuaguugcggugUCGGACAUguGu -3' miRNA: 3'- -UUGGUCU--UGGAGGCU-----------AGCUUGUGguC- -5' |
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7285 | 3' | -52.6 | NC_001900.1 | + | 18319 | 0.67 | 0.771323 |
Target: 5'- cAGCCAgGAGCCUgCGucAUCGAACcagcucuugaucuuGCCGGg -3' miRNA: 3'- -UUGGU-CUUGGAgGC--UAGCUUG--------------UGGUC- -5' |
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7285 | 3' | -52.6 | NC_001900.1 | + | 3087 | 0.67 | 0.774446 |
Target: 5'- cGCCGGucGCCUUCGGUC-AGCAgCAGu -3' miRNA: 3'- uUGGUCu-UGGAGGCUAGcUUGUgGUC- -5' |
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7285 | 3' | -52.6 | NC_001900.1 | + | 3333 | 0.66 | 0.814601 |
Target: 5'- uGACCAGGcagagcAUCUCCaGGUCGAACggguuGCCGa -3' miRNA: 3'- -UUGGUCU------UGGAGG-CUAGCUUG-----UGGUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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