Results 21 - 28 of 28 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
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R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 7285 | 5' | -59.5 | NC_001900.1 | + | 10159 | 0.68 | 0.356981 |
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Target: 5'- cGCUGAcaauCCGGCCuccgcuGAGGCCAUCa -3' miRNA: 3'- cCGACUcgc-GGCUGGu-----CUCCGGUAGc -5' |
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| 7285 | 5' | -59.5 | NC_001900.1 | + | 9277 | 1.11 | 0.000237 |
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Target: 5'- aGGCUGAGCGCCGACCAGAGGCCAUCGg -3' miRNA: 3'- -CCGACUCGCGGCUGGUCUCCGGUAGC- -5' |
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| 7285 | 5' | -59.5 | NC_001900.1 | + | 8712 | 0.7 | 0.267065 |
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Target: 5'- aGGCcgucgGAGacccggcaGCCGACCAGAG-CCGUCc -3' miRNA: 3'- -CCGa----CUCg-------CGGCUGGUCUCcGGUAGc -5' |
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| 7285 | 5' | -59.5 | NC_001900.1 | + | 6692 | 0.66 | 0.455396 |
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Target: 5'- gGGCUGGcccGUGCCGugaacggugaacaGCCAGGGcuuGCuCAUCGg -3' miRNA: 3'- -CCGACU---CGCGGC-------------UGGUCUC---CG-GUAGC- -5' |
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| 7285 | 5' | -59.5 | NC_001900.1 | + | 6614 | 0.66 | 0.466127 |
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Target: 5'- uGGCUGuAG-GCCGGuuGGAuGCCGUUGa -3' miRNA: 3'- -CCGAC-UCgCGGCUggUCUcCGGUAGC- -5' |
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| 7285 | 5' | -59.5 | NC_001900.1 | + | 6379 | 0.7 | 0.260461 |
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Target: 5'- cGGCU--GCGCCGACCagguugAGAGcGCCAgCGa -3' miRNA: 3'- -CCGAcuCGCGGCUGG------UCUC-CGGUaGC- -5' |
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| 7285 | 5' | -59.5 | NC_001900.1 | + | 5392 | 0.73 | 0.158809 |
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Target: 5'- gGGUUGGuGCaGUCGGCCuggauGAGGCCGUCa -3' miRNA: 3'- -CCGACU-CG-CGGCUGGu----CUCCGGUAGc -5' |
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| 7285 | 5' | -59.5 | NC_001900.1 | + | 781 | 0.66 | 0.475995 |
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Target: 5'- cGCUGcGGC-CCGuggcaugucccGCCAGAGGCUgaaAUCGg -3' miRNA: 3'- cCGAC-UCGcGGC-----------UGGUCUCCGG---UAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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