Results 21 - 28 of 28 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 7285 | 5' | -59.5 | NC_001900.1 | + | 30555 | 0.67 | 0.382542 |
|
Target: 5'- cGCUG-GUGcCCGACguGAgccGGCCGUUGg -3' miRNA: 3'- cCGACuCGC-GGCUGguCU---CCGGUAGC- -5' |
|||||||
| 7285 | 5' | -59.5 | NC_001900.1 | + | 34833 | 0.67 | 0.415701 |
|
Target: 5'- cGGCgGuGCGCUGACCggucucgaugcgauGGAGaucgaccacGCCAUCGc -3' miRNA: 3'- -CCGaCuCGCGGCUGG--------------UCUC---------CGGUAGC- -5' |
|||||||
| 7285 | 5' | -59.5 | NC_001900.1 | + | 23200 | 0.66 | 0.446716 |
|
Target: 5'- gGGCUGcgcccgucAGgGCCGACCAGAaguGGUuccaCGUCu -3' miRNA: 3'- -CCGAC--------UCgCGGCUGGUCU---CCG----GUAGc -5' |
|||||||
| 7285 | 5' | -59.5 | NC_001900.1 | + | 6692 | 0.66 | 0.455396 |
|
Target: 5'- gGGCUGGcccGUGCCGugaacggugaacaGCCAGGGcuuGCuCAUCGg -3' miRNA: 3'- -CCGACU---CGCGGC-------------UGGUCUC---CG-GUAGC- -5' |
|||||||
| 7285 | 5' | -59.5 | NC_001900.1 | + | 32922 | 0.66 | 0.456366 |
|
Target: 5'- cGGCUGAuccacgcuuGacaGCC-ACCGGGGGCCAgcaaCGa -3' miRNA: 3'- -CCGACU---------Cg--CGGcUGGUCUCCGGUa---GC- -5' |
|||||||
| 7285 | 5' | -59.5 | NC_001900.1 | + | 6614 | 0.66 | 0.466127 |
|
Target: 5'- uGGCUGuAG-GCCGGuuGGAuGCCGUUGa -3' miRNA: 3'- -CCGAC-UCgCGGCUggUCUcCGGUAGC- -5' |
|||||||
| 7285 | 5' | -59.5 | NC_001900.1 | + | 781 | 0.66 | 0.475995 |
|
Target: 5'- cGCUGcGGC-CCGuggcaugucccGCCAGAGGCUgaaAUCGg -3' miRNA: 3'- cCGAC-UCGcGGC-----------UGGUCUCCGG---UAGC- -5' |
|||||||
| 7285 | 5' | -59.5 | NC_001900.1 | + | 43177 | 0.66 | 0.475995 |
|
Target: 5'- gGGCUG-GCuGCUGaACCGGccAGGCCGcagCGg -3' miRNA: 3'- -CCGACuCG-CGGC-UGGUC--UCCGGUa--GC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home