miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7287 5' -54.3 NC_001900.1 + 45733 0.66 0.737316
Target:  5'- cCGUgagCGuGuGCGCCguGAAGGCAAGAa -3'
miRNA:   3'- cGCAa--GCuCcUGCGG--CUUCCGUUCUa -5'
7287 5' -54.3 NC_001900.1 + 32495 0.66 0.715726
Target:  5'- gGCGUuuacggagcugUCGGGcuccGACGCCGAcaAGGcCAAGGa -3'
miRNA:   3'- -CGCA-----------AGCUC----CUGCGGCU--UCC-GUUCUa -5'
7287 5' -54.3 NC_001900.1 + 37779 0.66 0.715726
Target:  5'- aGCGgaucuaCGAGGAgccUGUCGAGGGCGAa-- -3'
miRNA:   3'- -CGCaa----GCUCCU---GCGGCUUCCGUUcua -5'
7287 5' -54.3 NC_001900.1 + 19764 0.66 0.714636
Target:  5'- uCGUUCGAGGACGaggaguucgccaaCCGccGGCucAAGAc -3'
miRNA:   3'- cGCAAGCUCCUGC-------------GGCuuCCG--UUCUa -5'
7287 5' -54.3 NC_001900.1 + 8793 0.67 0.693793
Target:  5'- -aGUUCGAGGcauACGUCGAcuccugGGGCcGGAc -3'
miRNA:   3'- cgCAAGCUCC---UGCGGCU------UCCGuUCUa -5'
7287 5' -54.3 NC_001900.1 + 15165 0.67 0.64928
Target:  5'- gGC-UUCGAGGGCGgCGAuuccgAGGuCAAGGg -3'
miRNA:   3'- -CGcAAGCUCCUGCgGCU-----UCC-GUUCUa -5'
7287 5' -54.3 NC_001900.1 + 37251 0.68 0.593343
Target:  5'- uGCcUUCGuGGACGCCGAcaGGGCc---- -3'
miRNA:   3'- -CGcAAGCuCCUGCGGCU--UCCGuucua -5'
7287 5' -54.3 NC_001900.1 + 30365 0.69 0.560108
Target:  5'- cGCGacCGAGGAUGUCGcgGAGGCGuucgaGGAg -3'
miRNA:   3'- -CGCaaGCUCCUGCGGC--UUCCGU-----UCUa -5'
7287 5' -54.3 NC_001900.1 + 9717 0.7 0.506009
Target:  5'- aCGUUCGGGuGGuuccggGCCGAAGGCGAGu- -3'
miRNA:   3'- cGCAAGCUC-CUg-----CGGCUUCCGUUCua -5'
7287 5' -54.3 NC_001900.1 + 9408 0.73 0.318567
Target:  5'- ---cUCGGGGACGCCGAcgAGGCGgacgaAGAg -3'
miRNA:   3'- cgcaAGCUCCUGCGGCU--UCCGU-----UCUa -5'
7287 5' -54.3 NC_001900.1 + 8905 0.78 0.161297
Target:  5'- cGCGUUCGAcugugagcgccuggaGGACGCgguccuCGAAGGCGAGGUc -3'
miRNA:   3'- -CGCAAGCU---------------CCUGCG------GCUUCCGUUCUA- -5'
7287 5' -54.3 NC_001900.1 + 10024 1.07 0.001456
Target:  5'- gGCGUUCGAGGACGCCGAAGGCAAGAUc -3'
miRNA:   3'- -CGCAAGCUCCUGCGGCUUCCGUUCUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.