miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7288 3' -53.6 NC_001900.1 + 48636 0.66 0.781066
Target:  5'- gUGCCcgguaUGGGUGCUGUgaGCUGcACAAUCg -3'
miRNA:   3'- -AUGG-----ACUCAUGGCGg-CGAC-UGUUAGg -5'
7288 3' -53.6 NC_001900.1 + 26354 0.66 0.770779
Target:  5'- gGCCcGaAGUACCGCUGCccGuCGAUCg -3'
miRNA:   3'- aUGGaC-UCAUGGCGGCGa-CuGUUAGg -5'
7288 3' -53.6 NC_001900.1 + 30982 0.66 0.760341
Target:  5'- -uCCUGGGUGCUGCCcaucGAgGAUCUg -3'
miRNA:   3'- auGGACUCAUGGCGGcga-CUgUUAGG- -5'
7288 3' -53.6 NC_001900.1 + 46429 0.66 0.75929
Target:  5'- gGCCUcGGUACCucugcgccucaugGCCGCaccgUGAgCAGUCCc -3'
miRNA:   3'- aUGGAcUCAUGG-------------CGGCG----ACU-GUUAGG- -5'
7288 3' -53.6 NC_001900.1 + 25472 0.66 0.749765
Target:  5'- gGCCUGA--GCCGCCaGCgUGGC--UCCc -3'
miRNA:   3'- aUGGACUcaUGGCGG-CG-ACUGuuAGG- -5'
7288 3' -53.6 NC_001900.1 + 31836 0.66 0.739064
Target:  5'- gACCUGA---CCGCCGCgaACGGUCg -3'
miRNA:   3'- aUGGACUcauGGCGGCGacUGUUAGg -5'
7288 3' -53.6 NC_001900.1 + 4104 0.66 0.739064
Target:  5'- -uCCcGAaccGCUGCCGCUGGCAGUUg -3'
miRNA:   3'- auGGaCUca-UGGCGGCGACUGUUAGg -5'
7288 3' -53.6 NC_001900.1 + 1161 0.66 0.728248
Target:  5'- -uCCagGGGcACCGCCGCUaccGGCgGAUCCu -3'
miRNA:   3'- auGGa-CUCaUGGCGGCGA---CUG-UUAGG- -5'
7288 3' -53.6 NC_001900.1 + 38759 0.66 0.728248
Target:  5'- -cCCUGGucaugagauGUACCgagGCUGcCUGGCGAUCCc -3'
miRNA:   3'- auGGACU---------CAUGG---CGGC-GACUGUUAGG- -5'
7288 3' -53.6 NC_001900.1 + 29020 0.67 0.717332
Target:  5'- gUACCUGGGU--CGgCGCUGAUGG-CCg -3'
miRNA:   3'- -AUGGACUCAugGCgGCGACUGUUaGG- -5'
7288 3' -53.6 NC_001900.1 + 18059 0.67 0.706327
Target:  5'- aACCUGGcUGCgGCCguggugcagGCUGGCGcGUCCa -3'
miRNA:   3'- aUGGACUcAUGgCGG---------CGACUGU-UAGG- -5'
7288 3' -53.6 NC_001900.1 + 6564 0.67 0.672903
Target:  5'- gAgCUGGGggACCgcGCCGUUGACAGcggacUCCa -3'
miRNA:   3'- aUgGACUCa-UGG--CGGCGACUGUU-----AGG- -5'
7288 3' -53.6 NC_001900.1 + 13169 0.68 0.661664
Target:  5'- cGCCUGA---UCGCgGCUGGCGGUUg -3'
miRNA:   3'- aUGGACUcauGGCGgCGACUGUUAGg -5'
7288 3' -53.6 NC_001900.1 + 27908 0.68 0.639112
Target:  5'- --gCUGGGccGCUGCCG-UGGCGAUCCc -3'
miRNA:   3'- augGACUCa-UGGCGGCgACUGUUAGG- -5'
7288 3' -53.6 NC_001900.1 + 36357 0.69 0.582797
Target:  5'- gUACCUG-GUcgacaucCUGCCGCUGGCGAUg- -3'
miRNA:   3'- -AUGGACuCAu------GGCGGCGACUGUUAgg -5'
7288 3' -53.6 NC_001900.1 + 3275 0.69 0.560505
Target:  5'- cUGCCUGGucACCGgccgcgacuuCCGCUGGuCGAUCCc -3'
miRNA:   3'- -AUGGACUcaUGGC----------GGCGACU-GUUAGG- -5'
7288 3' -53.6 NC_001900.1 + 18863 0.7 0.538455
Target:  5'- gACCUGGGUAUCuCCGggGACGGUgCg -3'
miRNA:   3'- aUGGACUCAUGGcGGCgaCUGUUAgG- -5'
7288 3' -53.6 NC_001900.1 + 26171 0.72 0.433805
Target:  5'- -uCCUuGGUGCCGCCagcgaggucucGCUcGGCGAUCCa -3'
miRNA:   3'- auGGAcUCAUGGCGG-----------CGA-CUGUUAGG- -5'
7288 3' -53.6 NC_001900.1 + 39681 0.73 0.367981
Target:  5'- cACCUGugauGUAUCGCCGUggGAacaGAUCCa -3'
miRNA:   3'- aUGGACu---CAUGGCGGCGa-CUg--UUAGG- -5'
7288 3' -53.6 NC_001900.1 + 43144 0.73 0.359154
Target:  5'- cGCUcGGGUGCCGCCugaGCUGAUgucccccagGAUCCa -3'
miRNA:   3'- aUGGaCUCAUGGCGG---CGACUG---------UUAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.