miRNA display CGI


Results 1 - 20 of 35 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7288 5' -60 NC_001900.1 + 565 0.66 0.438423
Target:  5'- --cGGCCGcagaUCGGGGaucucguaCGCGGAuGAGCUu -3'
miRNA:   3'- acuCCGGU----AGUCCCg-------GCGUCU-CUCGG- -5'
7288 5' -60 NC_001900.1 + 2207 0.67 0.341057
Target:  5'- --cGGCCAccaagUGGGGUgGCugGGAGGGCCu -3'
miRNA:   3'- acuCCGGUa----GUCCCGgCG--UCUCUCGG- -5'
7288 5' -60 NC_001900.1 + 5037 0.7 0.217513
Target:  5'- cGGGGUgAauccCAGGGCCGCaacgccucccggAGGGAGUCg -3'
miRNA:   3'- aCUCCGgUa---GUCCCGGCG------------UCUCUCGG- -5'
7288 5' -60 NC_001900.1 + 5371 0.73 0.141867
Target:  5'- aUGAGGCCGUCAcgcacGGCCGgCAGcAGuGCUa -3'
miRNA:   3'- -ACUCCGGUAGUc----CCGGC-GUC-UCuCGG- -5'
7288 5' -60 NC_001900.1 + 5748 0.67 0.349234
Target:  5'- cGAGGUCG-CGGcGGUCGCuGAGuGCg -3'
miRNA:   3'- aCUCCGGUaGUC-CCGGCGuCUCuCGg -5'
7288 5' -60 NC_001900.1 + 6803 0.69 0.266965
Target:  5'- cGAcGGCCAcaUCGGgaaGGCCGCAGcGGGGUa -3'
miRNA:   3'- aCU-CCGGU--AGUC---CCGGCGUC-UCUCGg -5'
7288 5' -60 NC_001900.1 + 8053 0.66 0.401175
Target:  5'- gUGGGGCCA--GGGGCCuGaCGGcaaGGCCa -3'
miRNA:   3'- -ACUCCGGUagUCCCGG-C-GUCuc-UCGG- -5'
7288 5' -60 NC_001900.1 + 9125 0.68 0.333019
Target:  5'- aGaAGGCCcgCAcGGGCCgGguGGuGGCCg -3'
miRNA:   3'- aC-UCCGGuaGU-CCCGG-CguCUcUCGG- -5'
7288 5' -60 NC_001900.1 + 9902 0.7 0.246798
Target:  5'- cGGGGUgAUCucagAGGuGCCGUAcagguccGAGAGCCg -3'
miRNA:   3'- aCUCCGgUAG----UCC-CGGCGU-------CUCUCGG- -5'
7288 5' -60 NC_001900.1 + 10179 1.12 0.000168
Target:  5'- cUGAGGCCAUCAGGGCCGCAGAGAGCCg -3'
miRNA:   3'- -ACUCCGGUAGUCCCGGCGUCUCUCGG- -5'
7288 5' -60 NC_001900.1 + 10225 0.67 0.344311
Target:  5'- gGAGGCCggauGUCAGcGGCgGUacucagguacuggggAGGGAGUCc -3'
miRNA:   3'- aCUCCGG----UAGUC-CCGgCG---------------UCUCUCGG- -5'
7288 5' -60 NC_001900.1 + 15365 0.73 0.15393
Target:  5'- gGAGGCguUC-GGGCCGUAGuacaGGCCg -3'
miRNA:   3'- aCUCCGguAGuCCCGGCGUCuc--UCGG- -5'
7288 5' -60 NC_001900.1 + 19740 0.66 0.410298
Target:  5'- aGGGGaaGUCAGGGaucuucUCGguG-GAGCCg -3'
miRNA:   3'- aCUCCggUAGUCCC------GGCguCuCUCGG- -5'
7288 5' -60 NC_001900.1 + 22320 0.66 0.438423
Target:  5'- --cGGCCAUCGcuGGGCCGgGGc-GGUCg -3'
miRNA:   3'- acuCCGGUAGU--CCCGGCgUCucUCGG- -5'
7288 5' -60 NC_001900.1 + 23390 0.77 0.072602
Target:  5'- gGAcGGCCAUCA-GGCCGaguggaccgacCAGGGAGCCa -3'
miRNA:   3'- aCU-CCGGUAGUcCCGGC-----------GUCUCUCGG- -5'
7288 5' -60 NC_001900.1 + 23856 0.71 0.185752
Target:  5'- --cGGaCCA-CAGGGCCaGUcGAGAGCCg -3'
miRNA:   3'- acuCC-GGUaGUCCCGG-CGuCUCUCGG- -5'
7288 5' -60 NC_001900.1 + 25393 0.68 0.333019
Target:  5'- cUGAGGCCAUCuGGuacuucaucGCCaugcGCGGAGucguguGCCc -3'
miRNA:   3'- -ACUCCGGUAGuCC---------CGG----CGUCUCu-----CGG- -5'
7288 5' -60 NC_001900.1 + 27330 0.68 0.309744
Target:  5'- gGAGGCaCAaaaaaAGGGCUcCAGAaGGGCCa -3'
miRNA:   3'- aCUCCG-GUag---UCCCGGcGUCU-CUCGG- -5'
7288 5' -60 NC_001900.1 + 27647 0.67 0.383322
Target:  5'- -aGGGCUcUCGGGuGaCGUAGAGGGUCg -3'
miRNA:   3'- acUCCGGuAGUCC-CgGCGUCUCUCGG- -5'
7288 5' -60 NC_001900.1 + 27679 0.72 0.171457
Target:  5'- aUGAGGUCuUCGcGGUCGCAGuAGAGCa -3'
miRNA:   3'- -ACUCCGGuAGUcCCGGCGUC-UCUCGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.