miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
729 3' -47.3 AC_000020.1 + 9322 0.66 0.954488
Target:  5'- -gGCAGAGCGCGUaGUggcCGauuuGGCCCUu -3'
miRNA:   3'- agUGUUUUGUGCA-CAa--GUgu--UCGGGG- -5'
729 3' -47.3 AC_000020.1 + 15554 0.68 0.891711
Target:  5'- aUCugGAAAgAUGgcaUUgGCGGGCCCCc -3'
miRNA:   3'- -AGugUUUUgUGCac-AAgUGUUCGGGG- -5'
729 3' -47.3 AC_000020.1 + 7506 0.68 0.874372
Target:  5'- aCACAgcgcAGACugGUGggaaaaaauaucuUUCACccccauugGGGCCCCg -3'
miRNA:   3'- aGUGU----UUUGugCAC-------------AAGUG--------UUCGGGG- -5'
729 3' -47.3 AC_000020.1 + 11397 0.68 0.866528
Target:  5'- aCACAAAGCcagUGUaGUUCuccuGGCCCCg -3'
miRNA:   3'- aGUGUUUUGu--GCA-CAAGugu-UCGGGG- -5'
729 3' -47.3 AC_000020.1 + 15036 0.69 0.857531
Target:  5'- cUCGcCAGGACGCGc---CACGGGCUCCu -3'
miRNA:   3'- -AGU-GUUUUGUGCacaaGUGUUCGGGG- -5'
729 3' -47.3 AC_000020.1 + 15649 0.78 0.376855
Target:  5'- -gGCAGGAUGC-UGUUgGCAGGCCCCc -3'
miRNA:   3'- agUGUUUUGUGcACAAgUGUUCGGGG- -5'
729 3' -47.3 AC_000020.1 + 3296 1.14 0.001587
Target:  5'- gUCACAAAACACGUGUUCACAAGCCCCu -3'
miRNA:   3'- -AGUGUUUUGUGCACAAGUGUUCGGGG- -5'
729 3' -47.3 AC_000020.1 + 16471 0.74 0.562999
Target:  5'- aCAUAAAACcCGaag-CGCAGGCCCCg -3'
miRNA:   3'- aGUGUUUUGuGCacaaGUGUUCGGGG- -5'
729 3' -47.3 AC_000020.1 + 19545 0.68 0.883626
Target:  5'- -gACGugGCACGcGUcCAUcAGCCCCa -3'
miRNA:   3'- agUGUuuUGUGCaCAaGUGuUCGGGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.